AMCG00001280


Basic Information

Item Value
gene id AMCG00001280
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 22804274 ~ 22823565 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001280
ATGACGAGCCTCTTGTCTGTCTCTAACCTTCCGTGTGTGTCTCTgaccctgtgtctgtctgtgtgtgtttcccgCAACTGTCTGCAGCGCTGCAAGGACAAGCTGAACTCCCTGGCGATCTCTGTAATGAACTTGTGGCCAGGAGTGAAACTGCGGGTGACAGAGGGCTGGGACGAGGATGGCCACCACTCTGATGAGTCTCTTCACTATGAGGGCCGTGCTGTAGACATCACCACCTCTGACCGTGATCGCACCAAGTATGCTATGCTGGCCAGACTGGCAGTTGAGGCTGGTTTTGACTGGGTCTACTATGAGTCCAAGGCTCACGTCCACTGCAGTGTCAAATCAGAACATTCAGTAGCAGCCAAGACAGGAGGCTGCTTTCCTGGGAAGGCATTGGTGAGCCTGGAGACAGGAAAGCAAAAGGCACTGAGGGACCTTCAGCCCGGGGAACGTATTTTAGCCGCCTCGGTTGATGGGCAGCTGCTCTACAGCGAATTCATCACTTTCTTGGACAAGGACCCCTTAGCCAGGAAGCTCTTTTACACCATTCGGACTGAAGAAGAGTTCCCAAGGGAGTTGGCCCTCACTGCCGCCCATCTTCTGTTTGTGGCCACCAACTGCTCAGCAGGCATGGGCTCAGGGGAGTGGCGGACGATATACGCCAGTGAGGCTCAGCTGGGGCAGTGTGTGCTGGTGCCCAGGGGTCAGGGGGAACTGCGATCAGTCCGGATCAATTCAGTAGGCGTACAAGAGGACCTGGGGGTGTATGCCCCACTTACACGCCAGGGAACAGTGGTGGTGAACGGTGTCCTGGCTTCTTGCTATGCCACCTTTGACAAACACGCAGTGGCCCAATGGGCATTTGCCCCTCTTAGGCTGCTGTACAGTCTGATAGGGCCATCTGGTGGACAGGGGAATGGCCTCCACTGGTATCCCAGGCTCCTCTACCGCCTTGGGACACTCTTCTTGGACTCCAAGCACTTCCACCCCTTGGGGATGGCTGAGATCGAGAGATGA

Function

GO:

id name namespace
GO:0007267 cell-cell signaling biological_process
GO:0007275 multicellular organism development biological_process
GO:0016539 intein-mediated protein splicing biological_process
GO:0006508 proteolysis biological_process
GO:0005576 extracellular region cellular_component
GO:0005886 plasma membrane cellular_component
GO:0008233 peptidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001280 True 1020 mRNA 0.56 2 22804274 22823565

Neighbor

gene id symbol gene type direction distance location
AMCG00001281 NA coding downstream 19767 22781891 ~ 22784507 (-)
AMCG00001273 map3k2,LOC102792173,LOC107706666 coding downstream 306330 22471226 ~ 22497944 (-)
AMCG00001267 NA coding downstream 660939 22136819 ~ 22143335 (-)
AMCG00001266 atic,pur9,LOC106575709 coding downstream 701181 22085991 ~ 22103093 (-)
AMCG00001262 NA coding downstream 843890 21953204 ~ 21960384 (-)
AMCG00001282 ihh,ihha,LOC107688738,LOC107716791 coding upstream 8891 22832456 ~ 22846805 (-)
AMCG00001283 NA coding upstream 117087 22940652 ~ 23010915 (-)
AMCG00001286 NA coding upstream 233126 23056691 ~ 23095610 (-)
AMCG00001288 NA coding upstream 298439 23122004 ~ 23162725 (-)
AMCG00001287 NA coding upstream 352778 23176343 ~ 23188947 (-)
G130251 NA non-coding downstream 63167 22654917 ~ 22741107 (-)
G130215 NA non-coding downstream 288862 22502951 ~ 22515412 (-)
G130105 NA non-coding downstream 550120 22253751 ~ 22254154 (-)
G130101 NA non-coding downstream 570509 22233162 ~ 22233765 (-)
G130055 NA non-coding downstream 721356 22079082 ~ 22082918 (-)
G130278 NA non-coding upstream 35832 22859397 ~ 22859676 (-)
G130351 NA non-coding upstream 346251 23169816 ~ 23175342 (-)
G130364 NA non-coding upstream 456643 23280208 ~ 23280419 (-)
G130367 NA non-coding upstream 459911 23283476 ~ 23283727 (-)
G130456 NA non-coding upstream 861309 23684874 ~ 23685512 (-)
G130244 NA other downstream 189988 22607142 ~ 22614286 (-)
AMCG00001274 NA other downstream 339398 22451586 ~ 22464876 (-)
AMCG00001270 NA other downstream 501826 22259443 ~ 22302448 (-)
AMCG00001268 NA other downstream 583858 22202046 ~ 22220416 (-)
G130004 NA other downstream 981454 21789208 ~ 21822820 (-)
AMCG00001291 NA other upstream 686266 23509831 ~ 23555714 (-)
G130470 NA other upstream 899827 23723392 ~ 23725279 (-)
AMCG00001306 NA other upstream 1570961 24394526 ~ 24400546 (-)
AMCG00001303 NA other upstream 1581222 24404787 ~ 24419606 (-)
G130622 si:ch211-114n24.6,tuba4a,LOC107387629,LOC107659949,LOC108255233,LOC107659977,LOC107678212 other upstream 1611524 24435089 ~ 24439649 (-)

Expression


Co-expression Network