AMCG00001282 (ihh,ihha,LOC107688738,LOC107716791)


Basic Information

Item Value
gene id AMCG00001282
gene name ihh,ihha,LOC107688738,LOC107716791
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 22832456 ~ 22846805 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001282
ATGCGGCTGCCTGTGTTGCTGGCGCTCTTCAGCGGCTGCGCCCTGATCCTCTCCCCGGCTACCGAGGGTTGCGGGCCGGGCAGAGGATACGGCAAGAGACGGCCGCCTAGGAAGCTCACGCCACTCGCCTATAAACAGTTCAGCCCGAATGTGGCCGAAAAAACACTAGGAGCGAGCGGCAGGTACGAGGGGAAAATAACCAGGAACTCGGATCGATTTAAAGAGCTCACTCCCAACTATAACCCCGACATCATATTCAAAGATGAGGAGAACACAGGTGCAGACCGCCTTATGACACAGTCCACTGTGGGAGATGGAGACCTGGAGCAGGAAGCTGACGAGAACATCATCTCCTGCTGCTTGACCATAAAGACCATAGCCATGCAAACATGGGCAGCATCTGCACTTGGGCAACAGCAAGGccgctctccaggaccagacaACAATCCCCTGGAGGAGGCATTGGCGGACAAACTGGTGGAATCCCATCCACTCAGCTGCGAGAGTGCCAGTGTCAGCAAGCACTCCAGGGTGGCAGTGACAGTCGACGTCGGAGGGGTTTGGGAATGTTGA

Function

symbol description
ihha Predicted to enable calcium ion binding activity and patched binding activity. Acts upstream of or within several processes, including enteric nervous system development; intramembranous ossification; and swim bladder morphogenesis. Predicted to be located in plasma membrane. Predicted to be active in extracellular space. Is expressed in several structures, including caudal fin skeleton; cranium; digestive system; pneumatic duct; and swim bladder bud. Human ortholog(s) of this gene implicated in acrocapitofemoral dysplasia; brachydactyly type A1; retinopathy of prematurity; and syndactyly type 1. Orthologous to human IHH (Indian hedgehog signaling molecule).
ihh Enables calcium ion binding activity and patched binding activity. Involved in cartilage development; embryonic digit morphogenesis; and smoothened signaling pathway. Located in plasma membrane. Implicated in acrocapitofemoral dysplasia; brachydactyly type A1; retinopathy of prematurity; and syndactyly type 1. Biomarker of autism spectrum disorder; familial adenomatous polyposis; and osteoarthritis.

NR:

description
PREDICTED: indian hedgehog protein

GO:

id name namespace
GO:0007224 smoothened signaling pathway biological_process
GO:0048795 swim bladder morphogenesis biological_process
GO:0007267 cell-cell signaling biological_process
GO:0016539 intein-mediated protein splicing biological_process
GO:0006508 proteolysis biological_process
GO:0001649 osteoblast differentiation biological_process
GO:0001957 intramembranous ossification biological_process
GO:0005576 extracellular region cellular_component
GO:0005886 plasma membrane cellular_component
GO:0008233 peptidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001282 True 573 mRNA 0.57 3 22832456 22846805

Neighbor

gene id symbol gene type direction distance location
AMCG00001280 NA coding downstream 8891 22804274 ~ 22823565 (-)
AMCG00001281 NA coding downstream 47949 22781891 ~ 22784507 (-)
AMCG00001273 map3k2,LOC102792173,LOC107706666 coding downstream 334512 22471226 ~ 22497944 (-)
AMCG00001267 NA coding downstream 689121 22136819 ~ 22143335 (-)
AMCG00001266 atic,pur9,LOC106575709 coding downstream 729363 22085991 ~ 22103093 (-)
AMCG00001283 NA coding upstream 93847 22940652 ~ 23010915 (-)
AMCG00001286 NA coding upstream 209886 23056691 ~ 23095610 (-)
AMCG00001288 NA coding upstream 275199 23122004 ~ 23162725 (-)
AMCG00001287 NA coding upstream 329538 23176343 ~ 23188947 (-)
AMCG00001289 NA coding upstream 400720 23247525 ~ 23267951 (-)
G130276 NA non-coding downstream 9338 22796634 ~ 22823118 (-)
G130251 NA non-coding downstream 91349 22654917 ~ 22741107 (-)
G130215 NA non-coding downstream 317044 22502951 ~ 22515412 (-)
G130105 NA non-coding downstream 578302 22253751 ~ 22254154 (-)
G130101 NA non-coding downstream 598691 22233162 ~ 22233765 (-)
G130278 NA non-coding upstream 12592 22859397 ~ 22859676 (-)
G130351 NA non-coding upstream 323011 23169816 ~ 23175342 (-)
G130364 NA non-coding upstream 433403 23280208 ~ 23280419 (-)
G130367 NA non-coding upstream 436671 23283476 ~ 23283727 (-)
G130456 NA non-coding upstream 838069 23684874 ~ 23685512 (-)
G130244 NA other downstream 218170 22607142 ~ 22614286 (-)
AMCG00001274 NA other downstream 367580 22451586 ~ 22464876 (-)
AMCG00001270 NA other downstream 530008 22259443 ~ 22302448 (-)
AMCG00001268 NA other downstream 612040 22202046 ~ 22220416 (-)
G130004 NA other downstream 1009636 21789208 ~ 21822820 (-)
AMCG00001291 NA other upstream 663026 23509831 ~ 23555714 (-)
G130470 NA other upstream 876587 23723392 ~ 23725279 (-)
AMCG00001306 NA other upstream 1547721 24394526 ~ 24400546 (-)
AMCG00001303 NA other upstream 1557982 24404787 ~ 24419606 (-)
G130622 si:ch211-114n24.6,tuba4a,LOC107387629,LOC107659949,LOC108255233,LOC107659977,LOC107678212 other upstream 1588284 24435089 ~ 24439649 (-)

Expression


Co-expression Network