AMCG00001283


Basic Information

Item Value
gene id AMCG00001283
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 22940652 ~ 23010915 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001283
GATGGAGGTGGAAGGACGCTCAGTTGGGGTTCTTCTGGACCAGCCCTGGGTGCCTGTGGAGATTGCGGAGATCCCCTTCCTGGCCAAAGTTCATTTTGGAGAAACCTCCTACAGACTGCTGATCTCAGATCTTGACACGGTTTGGCATGAAGACATGAACAGAGAAGCGATAAATCACCGGGCACAGGAGCTCAACAGGCGTCTGAAGGCCCCCGTGGCTTCTTTCTTCTGTCACCTGTGTGCGGTGGCACGGCCCAGGCTAAATGGAGGGGCGCCGGAGGACGTGATGGCTGTGTTCTCACAAGAGCGACTCCCACACCAGCTGCTGGTGCGTCTGAAAAGCGAGCTGGCCGGGGTGCCTTTCTACTGGGAGTTCCGCTGCTCCCCTGCTCCACTTTCAGTGGTGTGTGAACAGCTGGTACGCCCCCTACTGTCTGTGAGCCAGGTACTGCAGCGTCAGGTCCAGGAGCTGATGACGTTGCTGGGGAGGAAAGATGCTGAGATACAGGACTATAGGGACAATGGGGCTGTACTGAGCCGAGcacGAAACAAGAAAAGCATC

Function

GO:

id name namespace
GO:0006281 DNA repair biological_process
GO:0070419 nonhomologous end joining complex cellular_component

KEGG:

id description
K10980 NHEJ1, XLF; non-homologous end-joining factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001283 True 562 mRNA 0.57 4 22940652 23010915

Neighbor

gene id symbol gene type direction distance location
AMCG00001282 ihh,ihha,LOC107688738,LOC107716791 coding downstream 93847 22832456 ~ 22846805 (-)
AMCG00001280 NA coding downstream 117087 22804274 ~ 22823565 (-)
AMCG00001281 NA coding downstream 156145 22781891 ~ 22784507 (-)
AMCG00001273 map3k2,LOC102792173,LOC107706666 coding downstream 442708 22471226 ~ 22497944 (-)
AMCG00001267 NA coding downstream 797317 22136819 ~ 22143335 (-)
AMCG00001286 NA coding upstream 45776 23056691 ~ 23095610 (-)
AMCG00001288 NA coding upstream 111089 23122004 ~ 23162725 (-)
AMCG00001287 NA coding upstream 165428 23176343 ~ 23188947 (-)
AMCG00001289 NA coding upstream 236610 23247525 ~ 23267951 (-)
AMCG00001290 NA coding upstream 331902 23342817 ~ 23398981 (-)
G130278 NA non-coding downstream 80976 22859397 ~ 22859676 (-)
G130276 NA non-coding downstream 117534 22796634 ~ 22823118 (-)
G130251 NA non-coding downstream 199545 22654917 ~ 22741107 (-)
G130215 NA non-coding downstream 425240 22502951 ~ 22515412 (-)
G130105 NA non-coding downstream 686498 22253751 ~ 22254154 (-)
G130351 NA non-coding upstream 158901 23169816 ~ 23175342 (-)
G130364 NA non-coding upstream 269293 23280208 ~ 23280419 (-)
G130367 NA non-coding upstream 272561 23283476 ~ 23283727 (-)
G130456 NA non-coding upstream 673959 23684874 ~ 23685512 (-)
G130464 NA non-coding upstream 676912 23687827 ~ 23688157 (-)
G130244 NA other downstream 326366 22607142 ~ 22614286 (-)
AMCG00001274 NA other downstream 475776 22451586 ~ 22464876 (-)
AMCG00001270 NA other downstream 638204 22259443 ~ 22302448 (-)
AMCG00001268 NA other downstream 720236 22202046 ~ 22220416 (-)
G130004 NA other downstream 1117832 21789208 ~ 21822820 (-)
AMCG00001291 NA other upstream 498916 23509831 ~ 23555714 (-)
G130470 NA other upstream 712477 23723392 ~ 23725279 (-)
AMCG00001306 NA other upstream 1383611 24394526 ~ 24400546 (-)
AMCG00001303 NA other upstream 1393872 24404787 ~ 24419606 (-)
G130622 si:ch211-114n24.6,tuba4a,LOC107387629,LOC107659949,LOC108255233,LOC107659977,LOC107678212 other upstream 1424174 24435089 ~ 24439649 (-)

Expression


Co-expression Network