AMCG00001291


Basic Information

Item Value
gene id AMCG00001291
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 23509831 ~ 23555714 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001291
atGTATGATAAAATCATGCCAGTTGAAGAACAGTCAGCTCCTTCTGCACAAGAAACAGTGTAATTGTGGAGCAGCCAGTCCCTGGACCATCAACACAGCAGACCAGACAAGGATTCTGCAGCTGCTCACTCCCCTGATTCCAAAAGAAGAGTTGTCAGATTTGTACTGTGTTCCAGAGGATGACAAGGAGACCGTGGGAACCCGCGAGGAATTGCCCAGCTCAGATGATGAGTCCTGCCAAGTGATCTTTGTGGAGGGACTTGCCTCcacaaagaaaaagagaataaaagaaGGAAAGCCGTCACATACCCACATCTCTGGTAAAGCTCTGGGTACCAGTGGTGGTGCAGGGTTTGGCGACAAATTAAAAAGACCTGACCGGGATTTGCTTCCTCTTGACAGTAACTCGCCAACACAGGGATTTTTGCACAGGACTAAACGCACTCTCTTGAACAGGGATGAGGATGCAATGGAGGAAACCATTGAGGAGGTCATAGAGAAATACTGCTATGGTGTTGGCATGGGCAAACTGGATGAGGACGAGGGTAGTTTTCATTTGAGTCTTGGCTCAATAGCCAACCCTTATTTCTCAGATTCTGGTACCAGTATGGAATGGGATACACCGATAACAACAACCCTGGTGCCATGTAAATCAGAGGCCAAAGATCTCGGGTGCCTCTTGGATGTACATATCAATCTTGAAGATCAGAAGTATAAAATGCAACTGGACTCTGCCCTGAACCCTCAGCCAGAGAGTgaggcaaagaaaaaaaaggaaaccattaaGTTTAAAGAGCACGTAAAAAGGAGGGAATGGAAAAATAACACAGAAGATGTGCTTCCCCCACTACCACATGTGCCTCAGTCTTTTGTGGGAAAAACCTGGTCCCAAGTAATGTATGAAGATGACCTGAAAATCGAAGCACTGGTGAGGGAGTTCCGAGAAGGTTGCTTCCGATGCTATTTTGACAGTGAATCCTTGACCAAATTTGGAACAAGAAGTAAAATCCCAAAAAACAGGGAAGGGGTAATGCAAGAGACTCACTTTCATAGCAATTTGGGTTCAGCTGCAGCAAAAGTATTTCCCCTTTTGAATCATGATGATGAGTGTCATTCCACCATTTTTGTTCCCATGTGCAAAACTGCATTGCAGAAAAAGCCAGGGAGACGACACTGGCGCCTAGCATCAAGGTGCCAAGTCGTGAAAGTCAGCCATGGTACTCAAACTAGTTTGTTGAACTGCCCTGTGATTAAGGACAGAAAAATGTTGATCAAAGATAGTGAGCTGTCACAAGCCAAGGAAGTGCAGCAGGAATTAGGTTGTGAAAAGACACCAGACTTGAAAACAAGCTTTTGTGCTTTAAAACTGCCTGAAGCTTACAGCAAAATCATGAGTCCCTTGCAGCCTAAAACAGTTGTCTACGTACTTTCATCTCCAGAGTCCGGACAGTTTACATTAAAACCTGTTGCTGTCAGAAGGACTGGGAGAAAACGTAAATCTACAGAAAGCGATAGTGCGCTCAAATATAAGTACAAGAAAACCCCTCTAAAGTACTATGACCCCTCCACAAACCGGATTCTTAAAATGCCACCAAAGGGGGTGGCAATCTGCAAGCCAAAGAAGTTCCACCATGTACGGCAGTTGTTTCGCAGTCTCAGTCCAGACATAAACAAGGAGAAGCAGTTTGTGGAGCAGAAGGAAACCTGGAGCTCCACCAAAGGCAGAACCAACAGCATATCTGATTTCTGTGCCTCCACCTCTGGCTCATGCCTTGATAGTCGCAATGAAGATGGTTTGAGTTCCAACTTGAAAGGGGATGGCACTTCAGAGCAGGGATCGTCAGCTTCTAGCAGGAAGCCGGTCTTCAGGTCAAAAAGCAGATCTTCTATGTCTAGCAATAGCAGGTTTATTTTAAGCCCCCTAGCCCCTTCTAAATCTCACCCTGAAAGTGTTGTGATTATATCTCCCCTTCAGATAAAAAAGCCTGAAAGAAGTAATGCTCTTAGAACCAGAGGCACACGAGGCCAAGCACATGACAAGCACTCTGAATCACAGCCCAAGAACTCAAGAGAGAAGTCTCTGGGCCCTACAAAAGGACCAGGATTCCACTACAGAACCAGACAGGTGCCTCGTAGGCTGATGGAGAGGAAAGTCCAAGGGAGGTCGGACTTCACCATGAAAACTTCTCGTTGTAGGACAGCCAGAGTAGCTGAACAGAAAAATGAGTCCAACAAGGGTTTCCTAACAAGGGGCAAGACAAGGAATGTGCTTTGTGGAAGTGGGAAGGCaagtcaaacaaaaaacacaaaaaagaagcCTCTTAAAGGCAAGTTTTCTGCTCGACAAACTCCAAAAGTAAAAGGAGTGCGCACACAGAGCAGTGGGATTTTAACCAGGGCTTCAAGCAAACAACTGGAAGAACCATTAATAACGAGAACACTCAGGTCGTCATCTAAAAGAACACTGAGAAACAGACAGTTTGGCATAGAATGGACT
>TU163443
TGGGCGTACTCCGTGATACGCGTCACTGTATCACTCTGCGGGAAGAGAAAATGGGGAAACTTGAATTTGGATGCCGATAGGATCTTAAatggaataacaagaacaagatGTATGATAAAATCATGCCAGTTGAAGAACAGTCAGCTCCTTCTGCACAAGAAATAGATCGAACGCACACTGAAGTATTAACAAAAGCCGATAGGATCAGTGGAAACAGTGTAATTGTGGAGCAGCCAGTCCCTGGACCATCAACACAGCAGACCAGACAAGGATTCTGCAGCTGCTGTCAGGTTCTCTACAACAGTGTTGAACAGGTACAACACACTGCCAATAGTGATTCTTTAGTGttgttcttctgtttatttttattttttttgtatac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001291 True 2497 mRNA 0.45 4 23509831 23547309
TU163443 False 382 lncRNA 0.42 4 23539817 23555714

Neighbor

gene id symbol gene type direction distance location
AMCG00001290 NA coding downstream 110850 23342817 ~ 23398981 (-)
AMCG00001289 NA coding downstream 241880 23247525 ~ 23267951 (-)
AMCG00001287 NA coding downstream 320884 23176343 ~ 23188947 (-)
AMCG00001288 NA coding downstream 347106 23122004 ~ 23162725 (-)
AMCG00001286 NA coding downstream 414221 23056691 ~ 23095610 (-)
AMCG00001293 eef1b2,eef1d coding upstream 60757 23616471 ~ 23620922 (-)
AMCG00001295 NA coding upstream 310907 23866621 ~ 23884688 (-)
AMCG00001296 NA coding upstream 558586 24114300 ~ 24142020 (-)
AMCG00001301 NA coding upstream 799375 24355089 ~ 24365595 (-)
AMCG00001304 NA coding upstream 818961 24374675 ~ 24375851 (-)
G130367 NA non-coding downstream 226104 23283476 ~ 23283727 (-)
G130364 NA non-coding downstream 229412 23280208 ~ 23280419 (-)
G130351 NA non-coding downstream 334489 23169816 ~ 23175342 (-)
G130278 NA non-coding downstream 650155 22859397 ~ 22859676 (-)
G130276 NA non-coding downstream 686713 22796634 ~ 22823118 (-)
G130456 NA non-coding upstream 129160 23684874 ~ 23685512 (-)
G130464 NA non-coding upstream 132113 23687827 ~ 23688157 (-)
G130466 NA non-coding upstream 153006 23708720 ~ 23708968 (-)
G130469 ino80d,LOC106582458 non-coding upstream 166109 23721823 ~ 23722067 (-)
G130472 NA non-coding upstream 172909 23728623 ~ 23728858 (-)
G130244 NA other downstream 895545 22607142 ~ 22614286 (-)
AMCG00001274 NA other downstream 1044955 22451586 ~ 22464876 (-)
AMCG00001270 NA other downstream 1207383 22259443 ~ 22302448 (-)
AMCG00001268 NA other downstream 1289415 22202046 ~ 22220416 (-)
G130004 NA other downstream 1687011 21789208 ~ 21822820 (-)
G130470 NA other upstream 167678 23723392 ~ 23725279 (-)
AMCG00001306 NA other upstream 838812 24394526 ~ 24400546 (-)
AMCG00001303 NA other upstream 849073 24404787 ~ 24419606 (-)
G130622 si:ch211-114n24.6,tuba4a,LOC107387629,LOC107659949,LOC108255233,LOC107659977,LOC107678212 other upstream 879375 24435089 ~ 24439649 (-)
AMCG00001316 cfap65 other upstream 1041855 24597569 ~ 24685570 (-)

Expression


Co-expression Network