AMCG00001320


Basic Information

Item Value
gene id AMCG00001320
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 24806005 ~ 24865316 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001320
ATGGATAGCTACCTTGTGCCTTTACTTTTCGCCTCGCCTTGCCAGCTGGTAGCGACTGATACCGGAGTGAAGCGGCCCGAGTCACTCCTGTCCGTCCGTAaaCGAAGTGTTACCGTTATAAGCGGAAGAGGCAAAACCGGCGGAAAGCAGAGAGCGAAGGCCAAGACTCGCTCCTCCAGGGCTGGACTACAGTTCCTAGTCGGCCGTGTCCACAGGCTGCTGCGGAAGGGAAACTATGCCCAGCGCGTCGGTGCTGGAGCCCCGGACAGTGATAAAGAGTCCAACAAAGGATTTGTGAGAGCTGGACGACTCAGGGCAGTGATCCCACCCGGCCAGACAAAAGAGATTAGTTGCAGCGTAAGAACAGGGCCACTACCCACCAAACAGGAAGTCCTCTTCGAACCAAACGAGAACCCCAGATGGCCAGAAGGTCTGAATATTGCTGAAACGATCATCTGTCTGCAGAAAGTGATGGAGGAGCCGGAGACTGTGGACCCAGAACAACAGGAGACGGAAGAGGAAGATGAGATGGATGCAAATGAAGAAGAACATGAAATAGCTGGAGTGGGAGAGGAAAACGTGGAGCCTGTGGAAGCAGAATGCAGGGTGTCGGacgatgaagatgatgatgaagacATCATGCCCCACTCGAAATGGCCCAAAGTAAAGCAGGAGAATACGGACTGA

Function

GO:

id name namespace
GO:0006334 nucleosome assembly biological_process
GO:0000786 nucleosome cellular_component
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001320 True 687 mRNA 0.53 5 24806005 24865316

Neighbor

gene id symbol gene type direction distance location
AMCG00001318 NA coding downstream 88949 24716537 ~ 24717056 (-)
AMCG00001305 tba1a coding downstream 334926 24439406 ~ 24471079 (-)
AMCG00001307 LOC108255233,LOC107659949,LOC107714908 coding downstream 369306 24422147 ~ 24436699 (-)
AMCG00001308 NA coding downstream 423194 24375904 ~ 24382811 (-)
AMCG00001304 NA coding downstream 430154 24374675 ~ 24375851 (-)
AMCG00001321 NA coding upstream 117265 24982581 ~ 25010615 (-)
AMCG00001323 NA coding upstream 353786 25219102 ~ 25223511 (-)
AMCG00001326 NA coding upstream 378329 25243645 ~ 25246650 (-)
AMCG00001336 NA coding upstream 712372 25577688 ~ 25584557 (-)
AMCG00001341 NA coding upstream 810252 25675568 ~ 25707676 (-)
G130646 NA non-coding downstream 110974 24694808 ~ 24695031 (-)
G130633 NA non-coding downstream 227047 24576974 ~ 24578958 (-)
G130591 NA non-coding downstream 451764 24330250 ~ 24354241 (-)
G130574 NA non-coding downstream 611601 24190999 ~ 24194404 (-)
G130528 NA non-coding downstream 888787 23916993 ~ 23917218 (-)
G130671 NA non-coding upstream 49405 24914721 ~ 24914981 (-)
G130678 NA non-coding upstream 108563 24973879 ~ 24974084 (-)
G130686 NA non-coding upstream 159472 25024788 ~ 25025012 (-)
G130690 NA non-coding upstream 191305 25056621 ~ 25056920 (-)
G130691 NA non-coding upstream 219263 25084579 ~ 25084785 (-)
AMCG00001316 cfap65 other downstream 120435 24597569 ~ 24685570 (-)
G130622 si:ch211-114n24.6,tuba4a,LOC107387629,LOC107659949,LOC108255233,LOC107659977,LOC107678212 other downstream 366356 24435089 ~ 24439649 (-)
AMCG00001303 NA other downstream 386399 24404787 ~ 24419606 (-)
AMCG00001306 NA other downstream 405459 24394526 ~ 24400546 (-)
G130470 NA other downstream 1080726 23723392 ~ 23725279 (-)
G130735 NA other upstream 357580 25222896 ~ 25246452 (-)
AMCG00001327 NA other upstream 410486 25275802 ~ 25279969 (-)
G130767 NA other upstream 523911 25389227 ~ 25413847 (-)
G130771 NA other upstream 556608 25421924 ~ 25423354 (-)
G130779 NA other upstream 576297 25441613 ~ 25442631 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_034455 hist1h2a11 coding NC_007118.7 CM002891.2 6367904 ~ 6368406 (-)