AMCG00001336


Basic Information

Item Value
gene id AMCG00001336
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 25577688 ~ 25584557 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001336
ATGCAGAATCACAGCGGGAGAATCGGCTCTCTCGCCTCCTGCATCAGTGCAGAGACGGGCGGGGGCATCTCGGGGCGCAAAGCGGGCACTGGCCACGTACCTTTGCACACGGGCGAGCTCGGGCTTCTTCTCTCCGGGGAGCCTTTGTGTTCCGGGGACCTCCTGTGGTGCTTCACTCTCCCACCTGACGACGACGAGgacgaagaggaggaggaggaggaggaggaggagggcgatGCTGAAGACGAGGAAGGCGGCGGGACCACTGCCACCACCGGGGCTGACAGCAGGGTATCCGAGCCCCACGGCACCGCGGTGGGTGAAGGGCAGGGGGAGCCGGCGGAGGTCGGGGCAGAGAGGTGTGAAGCGGCGTGGTGGCCGTGCGGCGGTGCGGTTTGTTGCGGCGGCGGCGGGGGTCTGGTCGGGCTGCCCCGCGAGGAGGAGCCACCGCCCCCCGAGACCTGCGTGGGGCTGCCGCGCGCCGGCGCCGTCGTCTGCGTGCCCACCGCGGGGCCGCCgcgcgaggaggaggaggcgcgCGTGGGGCTCCCGCTGCGGCTGCGCGAGGGCGCGTGCGTGGCCGCCTCGATGCCGCTGCTGGCCGGCGGGCGCGGGGGCGGCgggggcggcggcggcggcggcggcggctggGGCTTCAGCTGGAAGGGCACCGTCGCCTTCATGGGCAGCAGGCGGCTGCCCGAACCCATCCCTGCGCCCCCCGAGGAGCCGCCGCAAGAGCCGGACGAGCCGCTCGAGGTGTACCTTCTCCTTCCTCTGCTCTGTCCTTCATCCCAAtggaagagagaagcaactTGCTTGGTGGAAGGAATTGAGAAGCAAAGCCTGGCAGTGTTAGGGATTGCATGGGATGGGTTCAAGGTTTTTCAACCACTCTGTGAGAAAGCAAAGGATTGTCTTCAGTGCCGCGGTGTCCTGTCAGGAAGCCAGAACGGAGGGCCCAAGCCAAGGGAACTGGACAGATGCAGGATTGCCACTgtGGTCACACGAGACAGACTGTGCCATTaagatgattaaaaacaaaaagtgcaaaaaaaaaaaacaacaaaacagcctTTCAAGCAAACATACAATGTGGAAATGGaggaaaacaaccaaaatggAAGCATCTtgaCATTGAAATGTGGAAAGGGAAACAAATGCCAACAGTTCACAGGCAAGTCATTCCGTTATCCGTGGGAACGGTTGCTGTGGCTGTGCCCCCGCCCACCAGGTAGACGGCAGTGCTGGATTTGGAGCGGCTGGCCGCCTGCTGGCTGTTGTTGTTGACCTCGCTGTCCACCGGCTCTGTGGAGATCACCCAGGTGGACGGGCGCCACCTCTTCAGAGAGTAGGGTGTCTTCACACGCTTCTTGATCTTCTCGCCAGAGCCCGCCTTGCCATCCCTCGATTCACCTTTAATGAAAGGAACGCAGTTGTAATATTTGGCTGCCATTTTGGACGATGAATGCCTTTCTACAGCTTAGATCTTACATCCCAACATATCTTTCAGTTACCATAAAGACAGATTAGAAATGAGTAtggatttgtattcattttaattagaagTCTATCTGTTCC

Function

GO:

id name namespace
GO:0003146 heart jogging biological_process
GO:0048570 notochord morphogenesis biological_process
GO:0030509 BMP signaling pathway biological_process
GO:0006468 protein phosphorylation biological_process
GO:0001944 vasculature development biological_process
GO:0001947 heart looping biological_process
GO:0016020 membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0005024 transforming growth factor beta-activated receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001336 True 1581 mRNA 0.60 6 25577688 25584557

Neighbor

gene id symbol gene type direction distance location
AMCG00001326 NA coding downstream 331038 25243645 ~ 25246650 (-)
AMCG00001323 NA coding downstream 354177 25219102 ~ 25223511 (-)
AMCG00001321 NA coding downstream 567073 24982581 ~ 25010615 (-)
AMCG00001320 NA coding downstream 712372 24806005 ~ 24865316 (-)
AMCG00001318 NA coding downstream 860632 24716537 ~ 24717056 (-)
AMCG00001341 NA coding upstream 91011 25675568 ~ 25707676 (-)
AMCG00001340 wdr12,LOC107677607,LOC107706661 coding upstream 124294 25708851 ~ 25716069 (-)
AMCG00001339 nol5,nop58,LOC106575044,LOC107705548 coding upstream 142826 25727383 ~ 25734042 (-)
AMCG00001342 NA coding upstream 165785 25750342 ~ 25762406 (-)
AMCG00001345 NA coding upstream 192875 25777432 ~ 25801381 (-)
G130781 NA non-coding downstream 126614 25449256 ~ 25451074 (-)
G130778 NA non-coding downstream 136862 25437645 ~ 25440826 (-)
G130777 NA non-coding downstream 142569 25434916 ~ 25435119 (-)
G130775 NA non-coding downstream 146021 25431443 ~ 25431667 (-)
G130769 NA non-coding downstream 156344 25421029 ~ 25421344 (-)
G130921 NA non-coding upstream 541254 26125811 ~ 26132592 (-)
G130944 NA non-coding upstream 703991 26288548 ~ 26293255 (-)
G130980 NA non-coding upstream 902636 26487193 ~ 26487686 (-)
G131015 NA non-coding upstream 1045679 26630236 ~ 26630628 (-)
G131016 NA non-coding upstream 1071454 26656011 ~ 26656252 (-)
G130779 NA other downstream 135057 25441613 ~ 25442631 (-)
G130771 NA other downstream 154334 25421924 ~ 25423354 (-)
G130767 NA other downstream 163841 25389227 ~ 25413847 (-)
AMCG00001327 NA other downstream 297719 25275802 ~ 25279969 (-)
G130735 NA other downstream 331236 25222896 ~ 25246452 (-)

Expression


Co-expression Network