AMCG00001339 (nol5,nop58,LOC106575044,LOC107705548)


Basic Information

Item Value
gene id AMCG00001339
gene name nol5,nop58,LOC106575044,LOC107705548
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 25727383 ~ 25734042 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001339
TGGCCAAGACAGCGGGCCTCCCTTTCCGCCGCGCAGTCTGCAGCACGCATGCGCATGAGCGGCGCGCAGACTCAGATGCCCGTCGTCGTGGGGAGAGAGCAGCAGCGTGGAGAGCCGCCGCACAGCCGCCGCACAGCCGCGCTTATAGCCTCACGGAAGAGGAAGACGTTAATGAGTTATTGAAGATGTTGGTGCTGTTTGAGACCGCCGCCGGCTATGCCATCTTTAAGGTcctggatgaaaaaaaaatccaggagGTGGACAGTCTGTGGAAGGAATTTGAAACTCCAGAAAAAGCCAATAAAATAGTGAAGCTCAAACACTTTGAAAAATTCCAGGACACCACCGAAGCACTGGCAGctGCCACTGCTTTGGTTGAAGGAAAGATCGGAAAAAGTCTGAAGAAGGTGCTGAAGAAGGTGGTGGCCAAAGAAGCGCATGAGCAGCTGGCTATCAGCGATGCTAAACTAGGAGGAGTGATCAAGGACAAGCTGAGCCTGAGTTGTGTGCACAGCCCGGCCGTGGCGGAGCTCATGAGGGGGATTCGCAAACAGATGGAGGGGCTGATCACTGGCCTGCCGCCCCGGGAGATGAGCGCCATGGCTCTGGGCCTGGCTCACAGCCTGTCGCGGTACAAACTGAAATTCAGTCCAGACAAAGTGGATACCATGATTGTTCAAGCTATATCTCTGCTTGACGATTTGGACAAGGAGCTGAACAATTACATCATGCGCTGCCGAGAGTGGTATGGGTGGCACTTCCCTGAGCTGGGAAAGATCATCACCGACAACCTGGCCTACTGTAAAAGTGTACGGAAAATAGGGGTCAGGACTAACGTGGCCACCACAGATCTCTCCGAGTTCCTGCCAGAGGAGGTGGAGGCTGAAGTGAAAACGGCGGCTGAGATCTCCATGGGCACAGAGGTTTCTGAGGAAGACATCAGCAACATCATGCACTTGTGTGACCAGGTGATTGAGATTTCGGAGTATCGGACACAGCTGTACGACTACCTGAAGAACAGgatgatggccatagcccccaACCTCACCATCATGGTGGGAGAGCTGGTGGGAGCAAGACTCATCTCACACGCTGGATCTCTGCTGAATTTAGCCAAGCACCCAGCCTCCACTGTCCAGATCCTGGGTGCAGAGAAAGCTCTGTTCAGGGCCTTGAAGACCAAGAGGGACACTCCTAAGTACGGCCTAATCTATCATGCTTCCTTAGTAGGACAGACCACACCAAAGAACAAGGGAAAGATCTCCAGGATGCTGGCAGCCAAGGCAGCGCTGGCGATCAGATACGACGCTCTGGGCGacgacacaaacacagaaatgggAACTGAAAACCGAGCCAAGCTGGAGGCCAGGCTACGACACATAGAAGACAAAGGAATCAGAAGAATAAGCGGTACAGGAAAGGCGTTGGCGAAGGCAGAAAAGTACCAGCACAAGAGTGACGTTAAGGTCTACGACCCCTCCGGCGACTCCACACTACCCTCGGTATCGAAGAAAAGGAAGtttgaagaggaggaggaggaagaggagcagcCTGTTGCGGTGAAGGCAAAGAAAGTTAAGAAGGAACAAGTGGCAGAAGAAGCGGCAGAGACAGAAGAGGGAGAGCCTcctaaaaagaagaaaaagaagaaggagaagaagcagGAGGCTGctgaagaggaggaggcagcGGAAGAGCCCAGCACCAGCGTTGCAGCTGAAGAGaccacagaaaagaagaaaaagaagaagaagaaatccaAAGATGACTGAACATGAGAtgtctgtttttacttttgtaccCGACCCTTTTCTTTGTCAGCATACAATTTAGGTTTTTATACGTAGTGGAGTCTGTGCAATACGGTATTCGTTATACGTTTGTCACAAAACTCCCAAGATCATGTGAAAACTGATTCATGTACCATAGGTTGTTCTGTAACGTTGTTTTACAGACTGTTGGACAGTGCAGATTGGTCCTGGCAATTTGCTTGTGAAAGACATGTACACCGTGCTAAACAGTGGCATTGTGGATCGAAGTGAAAAGACGtaaaatcaatttaaagcaaatatgtGCTTTTTATGTTGTATCTAACGTTCGCCTTATACAGATTAAtgtaacctttttattttgctaatctTTGATAActtttggttttaaacaaacatatctTTGGTCCACTGTCCAGTTGACATTTCTCTTTGGAAGTGTCTCGATGCTCTGTGAAAGCATTAAAGCAGTTACCCTATGATTTTTCTTTAGTGGGGAATGCAATTCAGATTGCTTTGTTTAGAAACATAGAGTACAAGTCAAAATTGCTGTTTGATCAAACCTAGAAATGTGAGGTTCCTGGACCTCTGCACAAATTTGATcttgtaatgtattaaatgcatttattttactatgtGGTGTTCCCTTGTTCTGgtttgttaaatatattcattgtaACAATTCTGCTGTTGGAATGTCTTGATTCAGTTTAGATCGTCCATTTCTGTAGTGTCcacatttcttctttaaaaCTGCAGGATCAGACCTAAAACATTCTGGAAACTTCTTGTGTATTCCATGTTGTTTACAAAAGTGcatgaatacaatttaaagtttTCCGTCTTGATTTGTGAGCAGCGGTGGATGAAAAATGGGTTTAAGGAGTTAAAATTTGGGAAACTTGTAACGCTACAAACATCTTCTGTAGCCGTCAAATTGTCTTGAGTTTTTCACaacaggcttttaaaaatgatactgctctaatacatatacacacacaatgtaacCTGTTTTGTGACTGGATGTTATGGGACATGGTGAGTTCATTTTGGGATGGGAAAGCCATATTGGTCAGGGGCGGGAGTGTTGGCAAAGTCCCAATGTCTGTG

Function

symbol description
nop58 Predicted to enable snoRNA binding activity. Predicted to act upstream of or within ribosome biogenesis. Predicted to be located in nucleolus. Predicted to be part of box C/D RNP complex and small-subunit processome. Is expressed in several structures, including axial vasculature; digestive system; musculature system; nervous system; and pectoral fin bud. Orthologous to human NOP58 (NOP58 ribonucleoprotein).

NR:

description
Nucleolar protein 5

GO: NA

KEGG:

id description
K14565 NOP58; nucleolar protein 58

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001339 True 2879 mRNA 0.47 15 25727383 25734042

Neighbor

gene id symbol gene type direction distance location
AMCG00001340 wdr12,LOC107677607,LOC107706661 coding downstream 11314 25708851 ~ 25716069 (-)
AMCG00001341 NA coding downstream 19707 25675568 ~ 25707676 (-)
AMCG00001336 NA coding downstream 142826 25577688 ~ 25584557 (-)
AMCG00001326 NA coding downstream 480733 25243645 ~ 25246650 (-)
AMCG00001323 NA coding downstream 503872 25219102 ~ 25223511 (-)
AMCG00001342 NA coding upstream 16300 25750342 ~ 25762406 (-)
AMCG00001345 NA coding upstream 43390 25777432 ~ 25801381 (-)
AMCG00001343 NA coding upstream 67855 25801897 ~ 25815797 (-)
AMCG00001344 fzd7a,fzd7,LOC107751502,LOC107752890,LOC107668396 coding upstream 81796 25815838 ~ 25817520 (-)
AMCG00001346 cdk15,LOC106575174,LOC106574248 coding upstream 225031 25959073 ~ 25992808 (-)
G130781 NA non-coding downstream 276309 25449256 ~ 25451074 (-)
G130778 NA non-coding downstream 286557 25437645 ~ 25440826 (-)
G130777 NA non-coding downstream 292264 25434916 ~ 25435119 (-)
G130775 NA non-coding downstream 295716 25431443 ~ 25431667 (-)
G130769 NA non-coding downstream 306039 25421029 ~ 25421344 (-)
G130921 NA non-coding upstream 391769 26125811 ~ 26132592 (-)
G130944 NA non-coding upstream 554506 26288548 ~ 26293255 (-)
G130980 NA non-coding upstream 753151 26487193 ~ 26487686 (-)
G131015 NA non-coding upstream 896194 26630236 ~ 26630628 (-)
G131016 NA non-coding upstream 921969 26656011 ~ 26656252 (-)
G130779 NA other downstream 284752 25441613 ~ 25442631 (-)
G130771 NA other downstream 304029 25421924 ~ 25423354 (-)
G130767 NA other downstream 313536 25389227 ~ 25413847 (-)
AMCG00001327 NA other downstream 447414 25275802 ~ 25279969 (-)
G130735 NA other downstream 480931 25222896 ~ 25246452 (-)

Expression


Co-expression Network