AMCG00001344 (fzd7a,fzd7,LOC107751502,LOC107752890,LOC107668396)


Basic Information

Item Value
gene id AMCG00001344
gene name fzd7a,fzd7,LOC107751502,LOC107752890,LOC107668396
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 25815838 ~ 25817520 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001344
ATGGCCATGCAGCGAGGGGCTCGGGCTGCGCTCAGTGTGCTGGCGCTGTGTGCGCTGCTGTGTGCGCTGCTGTGTCCGCGGCGGGCTCAGGCGCAGTACCACGGGGAGAAAGGCATCTCCATTCCGGAGCACGGCTTCTGCCAGCCCATCTCCATCCCCCTGTGCACGGACATCGCCTACAACCAGACCATCATGCCCAACCTGCTGGGCCACACCAACCAAGAGGACGCCGGGCTGGAGGTGCACCAGTTCTACCCGCTGGTCAAGGTCCAGTGCTCCATGGACCTCAAGTTCTTCCTGTGCTCCATGTACGCGCCGGTGTGCACGGTGCTGGAGCAGGCCATCCCCCCCTGCCGGTCGCTGTGCGAGAGAGCCCGGCAGGGCTGCGAGGCGCTTATGAATAAATTCGGCTTCCAGTGGCCCGAGCGGCTCAGGTGCGAGAACTTCCCTGTCCACGGCGCCGGCGAGATCTGCGTGGGCCAGAACACCTCCGACACCGGCAGCCCGACCTCCTACCCCACGCCTTACATCCCGGAGCTCATCACCCTGCCGCCCAACATGGGCCGCCCGAACCAGCCTTTCTCTTGCCCGAGGCAGCTCAAAGTGCCTACCTACCTCAACTACCACTTCTTGGGCGAGAAAGACTGCGGCGCCCCCTGTGAGCCCACCAAGCAAAATGGGCTGATGTACTTCCGAGAGGAGGAGGTGAAGTTCGGCCGCCTGTGGGTGGGTATCTGGTCCATCCTGTGCTGCGTGTCCACGCTGTTCACCGTGCTCACCTACCTGGTGGACATGAGGCGGTTCCGCTACCCAGAAAGGCCCATCATTTTCCTGTCGGGCTGCTACTTCATGGTGGCCGTCGCCTACGCGGCCGGCTTCCTCCTGGAGGACAAAGTGGTGTGCATTGATAAGTTTGCCGATGACGGCTACAAAACCGTGGCCCAGGGTACCAAGAAGGAGGGCTGCACCATTTTGTTCATGATCCTGTACTTCTTTGGCATGGCCAGCTCCATTTGGTGGGTTATCCTATCCCTGACTTGGTTCCTGTCAGCTGGCATGAAGTGGGGCCACGAAGCCATCGAGGCCAACTCGCAGTATTTCCACTTGGCGGCGTGGGCAGTGCCAGCCGTCAAGACCATCACCATCTTGGCCATGGGGCAAGTGGACGGGGACCTGCTGACAGGCGTGTGTTACGTGGGCATTTACAACGTGGATTCCCTGCGCGGCTTTGTGTTGGCACCTCTGTTCGTCTACCTCTTCATTGGCACCTCTTTCCTGCTGGCTGGCTTCGTGTCCCTCTTCAGGATCCGGACTATCATGAAGCACGACGGGACCAAGACGGAGAAGCTGGAGAAGCTCATGGTGCGGATCGGGGTCTTCAGCGTGCTGTACACGGTGCCCGCCACCATCGTCATCGCCTGCTATTTCTACGAGCAGGCTTTCCgggaccactgggagaagacCTGGCACATGCAGACCTGCAAACGGTTTGCCGTGCCCTGCCCCGTCAACAACTTTGCCCCCATGACGCCAGACTTCACAGTGTTTATGATCAAATACTTGATGACCATGATCGTGGGGATCACCTCTGGCTTTTGGATATGGTCTGGGAAAACCCTGCAGTCGTGGCGCAGGTTTTACAGCAGACTCAGTAACAACAACCAAGGCGAGACCACggtataa

Function

symbol description
fzd7a Predicted to enable Wnt-activated receptor activity and Wnt-protein binding activity. Acts upstream of or within several processes, including chondrocyte proliferation; epiboly; and gastrulation. Located in plasma membrane. Is expressed in several structures, including margin; mesenchyme; nervous system; neural tube; and pharyngeal arch. Orthologous to human FZD7 (frizzled class receptor 7).
fzd7 Enables several functions, including PDZ domain binding activity; Wnt-activated receptor activity; and Wnt-protein binding activity. Involved in several processes, including Wnt signaling pathway; negative regulation of cell differentiation; and positive regulation of cellular metabolic process. Located in plasma membrane and recycling endosome membrane. Biomarker of nephroblastoma.

NR:

description
Frizzled homolog 7a

GO:

id name namespace
GO:0042074 cell migration involved in gastrulation biological_process
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0060027 convergent extension involved in gastrulation biological_process
GO:0090504 epiboly biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0042813 Wnt-activated receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K02432 FZD1_7, fz; frizzled 1/7

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001344 True 1683 mRNA 0.60 1 25815838 25817520

Neighbor

gene id symbol gene type direction distance location
AMCG00001343 NA coding downstream 41 25801897 ~ 25815797 (-)
AMCG00001345 NA coding downstream 14457 25777432 ~ 25801381 (-)
AMCG00001342 NA coding downstream 53432 25750342 ~ 25762406 (-)
AMCG00001339 nol5,nop58,LOC106575044,LOC107705548 coding downstream 81796 25727383 ~ 25734042 (-)
AMCG00001340 wdr12,LOC107677607,LOC107706661 coding downstream 99769 25708851 ~ 25716069 (-)
AMCG00001346 cdk15,LOC106575174,LOC106574248 coding upstream 141553 25959073 ~ 25992808 (-)
AMCG00001354 NA coding upstream 482213 26299733 ~ 26360373 (-)
AMCG00001358 NA coding upstream 681773 26499293 ~ 26499996 (-)
AMCG00001359 NA coding upstream 712349 26529869 ~ 26536285 (-)
AMCG00001362 NA coding upstream 992818 26810338 ~ 26829451 (-)
G130781 NA non-coding downstream 364764 25449256 ~ 25451074 (-)
G130778 NA non-coding downstream 375012 25437645 ~ 25440826 (-)
G130777 NA non-coding downstream 380719 25434916 ~ 25435119 (-)
G130775 NA non-coding downstream 384171 25431443 ~ 25431667 (-)
G130769 NA non-coding downstream 394494 25421029 ~ 25421344 (-)
G130921 NA non-coding upstream 308291 26125811 ~ 26132592 (-)
G130944 NA non-coding upstream 471028 26288548 ~ 26293255 (-)
G130980 NA non-coding upstream 669673 26487193 ~ 26487686 (-)
G131015 NA non-coding upstream 812716 26630236 ~ 26630628 (-)
G131016 NA non-coding upstream 838491 26656011 ~ 26656252 (-)
G130779 NA other downstream 373207 25441613 ~ 25442631 (-)
G130771 NA other downstream 392484 25421924 ~ 25423354 (-)
G130767 NA other downstream 401991 25389227 ~ 25413847 (-)
AMCG00001327 NA other downstream 535869 25275802 ~ 25279969 (-)
G130735 NA other downstream 569386 25222896 ~ 25246452 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_037694 fzd7a coding NC_007120.7 CM002893.2 13352308 ~ 13355071 (-)