AMCG00001346 (cdk15,LOC106575174,LOC106574248)


Basic Information

Item Value
gene id AMCG00001346
gene name cdk15,LOC106575174,LOC106574248
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 25959073 ~ 25992808 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001346
ATGGAGGAGTGGGGCCGGGGAGCCGGAGCAGAGACCCTGAGGGCCGCTTGCTCTCGattttgctgttgctgtttccGCGCAACAACTGGACAGGACTCCGGCGCTGAGACCGAGACCCCTCCGGAACTGCCCTCCACTGAGCTCAATGATCTGGCAGATTCGGCCTTTCCTCCCGAACCCATCCAGCCCCAGTGGTTCCACACCCTGCAGGTCAGGAGACTGCAGGTCCAGAGGTCCAGAAGCAACAGTGACCCCCTGGGAGGGAGGAGCTTTGAGCAGGAGTTCCAGTGGAGAACCGGTCTTAAGTTTGGCACTGCAACATCCTATCTGAACCTGGAGAAGCTGGGTGAAGGATCCTACGCCACTGTCTACAAGGGGATCAGCCGGATAAATGGCCACCTGGTTGCCCTGAAGGTAATCCGAATGAAAACTGAAGAGGGGGTGCCCTTCACAGCAATCCGAGAAGCCTCCTTGCTGAAGGGCCTGAAACACGCCAACATCGTACTCCTCCATGACATTATCCACACGAGAGAGTCTCTGACCTTTGTCTTCGAATATGTGcaAACCGATCTGGCGCAGTACATGATTCAACACCCTGGAGGCCTGCACTCCTTCAATGTAAAGATTTTCCTGTTTCAGCTGCTCCGCGGTCTCTCCTACATCCATCGCCAGCGTATCCTGCATCGAGACCTCAAGCCCCAGAACCTGCTGATCAGCTACCTGGGAGAGCTCAAGCTGGCAGACTTCGGACTAGCACGGTCCAAGTCCATCCCCAGCCAGACCTACTCCTCCGAAGTGGTGACACTCTGGTACAGGCCTCCAGATGTGTTACTGGGGGCTACAGATTACTCCACAGGATTGGACATATGGGGAGCGGGCTGCATATTCATCGAAATGCTCCAGGGATCTCCGGCTTTCCCCGGTGTCGCCGACATCTTTGAACAACTGCAGAAGATCTGGGCTGTGGTAGGGGTACCAACTGAAGAAACCTGGCCTGGTGTGACCGAGCTGCCAAATTACAAGCCAGAATGGTTCCTGCCCTGTGAACCGAggatatttcaaaatgtctggAAAAGGTAA

Function

symbol description
cdk15 Predicted to enable cyclin binding activity and cyclin-dependent protein serine/threonine kinase activity. Predicted to be involved in protein phosphorylation and regulation of transcription involved in G1/S transition of mitotic cell cycle. Predicted to act upstream of or within phosphorylation. Predicted to be active in cytosol and nucleus. Orthologous to human CDK15 (cyclin dependent kinase 15).

NR:

description
PREDICTED: cyclin-dependent kinase 15 isoform X2

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004693 cyclin-dependent protein serine/threonine kinase activity molecular_function

KEGG:

id description
K15594 CDK15, PFTK2; cyclin-dependent kinase 15

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001346 True 1080 mRNA 0.55 11 25959073 25992808

Neighbor

gene id symbol gene type direction distance location
AMCG00001344 fzd7a,fzd7,LOC107751502,LOC107752890,LOC107668396 coding downstream 141553 25815838 ~ 25817520 (-)
AMCG00001343 NA coding downstream 143276 25801897 ~ 25815797 (-)
AMCG00001345 NA coding downstream 157692 25777432 ~ 25801381 (-)
AMCG00001342 NA coding downstream 196667 25750342 ~ 25762406 (-)
AMCG00001339 nol5,nop58,LOC106575044,LOC107705548 coding downstream 225031 25727383 ~ 25734042 (-)
AMCG00001354 NA coding upstream 306925 26299733 ~ 26360373 (-)
AMCG00001358 NA coding upstream 506485 26499293 ~ 26499996 (-)
AMCG00001359 NA coding upstream 537061 26529869 ~ 26536285 (-)
AMCG00001362 NA coding upstream 817530 26810338 ~ 26829451 (-)
AMCG00001368 NA coding upstream 932889 26925697 ~ 26931563 (-)
G130781 NA non-coding downstream 507999 25449256 ~ 25451074 (-)
G130778 NA non-coding downstream 518247 25437645 ~ 25440826 (-)
G130777 NA non-coding downstream 523954 25434916 ~ 25435119 (-)
G130775 NA non-coding downstream 527406 25431443 ~ 25431667 (-)
G130769 NA non-coding downstream 537729 25421029 ~ 25421344 (-)
G130921 NA non-coding upstream 133003 26125811 ~ 26132592 (-)
G130944 NA non-coding upstream 295740 26288548 ~ 26293255 (-)
G130980 NA non-coding upstream 494385 26487193 ~ 26487686 (-)
G131015 NA non-coding upstream 637428 26630236 ~ 26630628 (-)
G131016 NA non-coding upstream 663203 26656011 ~ 26656252 (-)
G130779 NA other downstream 516442 25441613 ~ 25442631 (-)
G130771 NA other downstream 535719 25421924 ~ 25423354 (-)
G130767 NA other downstream 545226 25389227 ~ 25413847 (-)
AMCG00001327 NA other downstream 679104 25275802 ~ 25279969 (-)
G130735 NA other downstream 712621 25222896 ~ 25246452 (-)

Expression


Co-expression Network