G125561


Basic Information

Item Value
gene id G125561
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 339640 ~ 403591 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU157377
CTGAGAGCCCGAGGAAGAAGAGACGATGGCCAGCAGTCACCAGAGATActtttttaaaagtttatttagTGAAATGACATTACAGAGAATAAATTAAGACTTTGAGGAGCAGAGTGTTGTGAGTGGTGGGCAGTGTGTCCGCAGGCTGGGCTGGAGGCCAGCGGGGGGTGGGTGTGCCACGGCACAGCGAGGAGAGGGACCCCTCCTTGGGAGAGTGTCCATCTTCCGCTCACACCCCCGGACAGACGCTGCCAGGACCGAGGGGAGAGGGCTGCAGGAGGTTGAAGGgttcccaaaaaaaaaaaagcaaacagaaagaaaaaaaatacatcccatagtcctttttttcctttgttggtCTACAAAATGGTGAAATGGATGTCCTGACACCATCAGGTCTTCAGATACAGTTCAACAACCACACCAGTCGCTTGAGTATCTCTTACACAGACATGATGTGCTTGACGAAAGTCGTAGGCGATGCAGCCGTTCTCGTCTTCCTGTCCCTGGAGCAGAGTGTCTACCTCAGCCTCAGTCATCTTCTCCCCAGTGTGGTCAGCACAATGCGCAGCTCAGCGCCCATCACTGTGCCGTTGCCCTCCTTGTCAAAGACACGCAGACCCTCAACAAAGTCCTCGTAGCCGCCCTTCTCTGTGCTGTTGGCCACGGTCTGGAGCATGGGCAGGAACTGGTCGAAGTCAATGGCCTTGGCATTCATTCCTCGGGGGTGGGGTTGCCCAGGACCTTGTTCACCTCCTTGTTGGTGGGGTTCTGGCCCAGAGCGCGCATGACGTCGGCCACCTGGCTGTAGGTGATCTTGCTCTGGCCGGTCCTGTCGAAGAGGAGGAAGGCCTCTTTGAagtc
>TU157379
CTGAGAGCCCGAGGAAGAAGAGACGATGGCCAGCAGTCACCAGAGATActtttttaaaagtttatttagTGAAATGACATTACAGAGAATAAATTAAGACTTTGAGGAGCAGAGTGTTGTGAGTGGTGGGCAGTGTGTCCGCAGGCTGGGCTGGAGGCCAGCGGGGGGTGGGTGTGCCACGGCACAGCGAGGAGAGGGACCCCTCCTTGGGAGAGTGTCCATCTTCCGCTCACACCCCCGGACAGACGCTGCCAGGACCGAGGGGAGAGGGCTGCAGGAGGTTGAAGGgttcccaaaaaaaaaaaagcaaacagaaagaaaaaaaatacatcccatagtcctttttttcctttgttggtCTACAAAATGGTGAAATGGATGTCCTGACACCATCAGGTCTTCAGATACAGTTCAACAACCACACCAGTCctggaaggagagagacagcagCACAGTCAGGGTCAGTGCGGCTCGCAAAGGCATCACAGACCGGGCCGGGCTGGGTCCACAGAACCAGGGACCACAGCTGAGCACGACAGCAGGAAAAACACCTGCATTCACACTTACTTTACTCTTTATACGATTGCATTTCCAGCATGGCTACACACTTTAAATCAGACTGTGTCAAActtaacagaaaacagaatgaTTTCCATAAAAAGTTACTGTCTATAGTCTTCAACATCCACAAGCTGAACCACGCCGGGCCGGAGTGACCTGGATAGCCCAGTCTCCTCGGCACCGAGGGCAGCAGTGAGCAGAAGGACAGAGGTACGTGTATTGCAAAGGTGTCCCATTGTGGGGGGACTGGACTGGAAGGCATGCAGTGACAGACGGGGAGAGGACACATACCGCTTGAGTATCTCTTACACAGACATGATGTGCTTGACGAAAGTCGTAGGCGATGCAGCCGTTCTCGTCTTCCTGTCCCTGGAGCAGAGTGTCTACCTCAGCCTCAGTCATCTCTCACCCAGTGTGGTCAGCACAATGCGCAGCTCAGCGCCCATCACTGTGCCGTTGCCCTCCTTGTCAAAGACACGCAGACCCTCAACAAAGTCCTCGTAGCCGCCCTTCTCTGTGCTGTTGGCCACGGTCTGGAGCATGGGCAGGAACTGGTCGAAGTCAATGGCCTTGGCATTCATTTCTGTGGGacggacacagagacacagtgagcCTCGTGTGCgcgtgcacgcacacacacactcagagctGTCCTGGCCAGCAGTGACACACATGACAGGACAATCACATGTTCTCTGACAGGTAAACGCTCAGTAGGCGGGTGTGACGGGCGCAGGGACTCACCCTCGGGGGTGGGGTTGCCCAGGACCTTGTTCACCTCCTTGTTGGTGGGGTTCTGGCCCAGAGCGCGCATGACGTCGGCCACCTGGCTGTAGGTGATCTTGCTCTGGCCGGTCCTGTCGAAGAGGAGGAAGGCCTCTTTGAagtc
>TU157380
CTGAGAGCCCGAGGAAGAAGAGACGATGGCCAGCAGTCACCAGAGATActtttttaaaagtttatttagTGAAATGACATTACAGAGAATAAATTAAGACTTTGAGGAGCAGAGTGTTGTGAGTGGTGGGCAGTGTGTCCGCAGGCTGGGCTGGAGGCCAGCGGGGGGTGGGTGTGCCACGGCACAGCGAGGAGAGGGACCCCTCCTTGGGAGAGTGTCCATCTTCCGCTCACACCCCCGGACAGACGCTGCCAGGACCGAGGGGAGAGGGCTGCAGGAGGTTGAAGGgttcccaaaaaaaaaaaaaaaaaaaaacagaaaaaaaaaaaaaacatc

Function

GO:

id name namespace
GO:0034702 ion channel complex cellular_component
GO:0034703 cation channel complex cellular_component
GO:0034704 calcium channel complex cellular_component
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
ko04020 Calcium signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
TU157377 False 864 TUCP 0.54 5 339640 341771
TU157379 True 1450 lncRNA 0.54 3 339640 341771
TU157380 False 336 lncRNA 0.51 3 339640 403591

Neighbor

gene id symbol gene type direction distance location
AMCG00000683 unc80 coding upstream 195745 138105 ~ 143895 (+)
AMCG00000681 NA coding upstream 299044 38752 ~ 40596 (+)
AMCG00000680 NA coding upstream 313359 21907 ~ 26281 (+)
AMCG00000695 cps1 coding downstream 10853 414444 ~ 414795 (+)
AMCG00000702 vwc2l coding downstream 708290 1111881 ~ 1133185 (+)
AMCG00000705 NA coding downstream 822726 1226317 ~ 1233934 (+)
AMCG00000708 NA coding downstream 845150 1248741 ~ 1249425 (+)
AMCG00000704 NA coding downstream 853190 1256781 ~ 1272965 (+)
G125516 NA non-coding upstream 210513 128859 ~ 129127 (+)
G125510 pofut2 non-coding upstream 222338 116111 ~ 117302 (+)
G125485 NA non-coding upstream 247020 92283 ~ 92620 (+)
G125484 NA non-coding upstream 248355 91043 ~ 91285 (+)
G125597 NA non-coding downstream 52911 456502 ~ 487203 (+)
G125605 erbb4,LOC107555909,LOC107741926,LOC107662043,LOC107721020,LOC107660610 non-coding downstream 126308 529899 ~ 531912 (+)
G125612 NA non-coding downstream 171699 575290 ~ 575492 (+)
G125613 NA non-coding downstream 193196 596787 ~ 597135 (+)
G125684 myo1b non-coding downstream 900504 1304095 ~ 1307335 (+)
AMCG00000723 crygs,LOC107756035,LOC107663530,LOC105911960,LOC103033891 other downstream 1196105 1599696 ~ 1606031 (+)
AMCG00000729 satb2,LOC107690605,LOC107569722 other downstream 1265254 1668845 ~ 1698573 (+)
AMCG00000734 NA other downstream 1401816 1805407 ~ 1814157 (+)
AMCG00000848 NA other downstream 5057710 5461301 ~ 5465981 (+)
G127134 NA other downstream 8213608 8617199 ~ 8620195 (+)

Expression


Co-expression Network