G125605 (erbb4,LOC107555909,LOC107741926,LOC107662043,LOC107721020,LOC107660610)


Basic Information

Item Value
gene id G125605
gene name erbb4,LOC107555909,LOC107741926,LOC107662043,LOC107721020,LOC107660610
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 529899 ~ 531912 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU157432
TGCACCagatcacatttatttatttactctgtaCAATTATATTAGAAACTTCAAAACCTTCCTCAATCCTCACTTTGGGGCGCGACCAGCTGTATTGGTTCTTGCCACAAATTACCAGAACTTCTTTATGAACCGTAATTCATGGTCATTTCACCCAGATTTTATTCTTCAGCCTCCAACGATTAATTTCAGTAACTGACTGAACCTTTTGCAACCAAGAAAAGTCAGACAAGTgtcaaacaacaacacacttgCACTGATAAACCCTGTTGCGCTGCACGTGCAGGAGGTCAACGATATCGCGCGTGGTTCTTATTGGGCCGATGACGGGCACACCAGATAATCCATGTCACCAGAACACGGTGCCAGATGTGCTTCGAGAGAAAAACTATTGAAAACTAGGATTGATTTGCCATTTCCATCTGTTCCGCTGGCCAGACACTGGGCAATGAATTACAGTCATAAAGAAGCTCTGCACACAAACCCCCTAATTGAACTGACACCCCGTCACCCCGTCACCTTGAGGTGTCCGTTCCCACTGGCCGGGCTCCCTGGCAAAGGTCCAGAGCCCGGAGGAGCCTTCGTGCACCCTGGCTGATTGCCATATTGCTTCAACCCTTGCCCACTTCCTGGAGACAGGGAAGGAGAACTGAGTGACCAAGGACAGTAAGACCAGCCTGCGCCCACACCCCCCCCGAGCAGCATCCCTGTCAAACCCCACAgtgtgttgttgcttttttccccatcGATTTCCTGTTGTGTGTTGCGTTGTTGTTTTCCAGCTCACGTGGGACCAGGGCAGATCGCCGGCAGCGCTCGACACCTCCCTGGGGTGAAACGGAGAGACGGGTCGCTCCACAGTCTGCGGGAGGGATGCTGGGGCAGGTGGGCGTCCTGATCCgagtgtgcgtgtctgtgtgtgtgtgtgcgcgtgtgtgacAGTTTGCGGGGTTTCCCCACACGTGTCAACATTGTCTTTGTTTCCAGTTCCGAGGTTTGCAAAAAAGAAAGTCTCGCTCAGAAAGCTCTCGCACAGGGAAACGGCACCGAAGACCAGGCACCTCCGCCGCCCCTCGATCGATGCTGGCTAGAGAATAAACGCTCCCCCCAGCCAtccccggcccggcccggcgcGCCGCCTGCTACACCACAGTGTTCCTCTGGCGGTAGGGGGGGGGCGGCAGCACGTTGCCGGGCTTCAGGGAGAACTCGGACAGGTACTCGGGGTTCTCCGCCACCACCGGCCGGATGCGCCCGTTCTGTTTGTAGAAGAACTTGGTGTTGCACTCCGGCAGGTACTCGGGGTTGTGCAGCGTGGACTTGGGTGGCAGGCTGTGGTGCCAGTACTCCGGATTGTCGAACGTCTTCTTGGGCTTCTTGTCGGCCAGCGTGCCGGTGGTGGCGGCCGTGTGGGCGATGGCGAGGGCGGGGTGCGGTGGGTGGGGGTGCGGCGGAGGCGGCGGCAGCCCGTTCTTCTTCAGGAACTCGGGGTTCTTGTCGGCCCCGGCGTTGTGGAAGGTGTTGAGGTACAGCGGCTCGTTCACGTACTCGTCCTCCAGCCGGGGCTGTCCGTTGGGCGCGGCATGGCCGTGGTAGCCGGGGTTGTCCAGCGCGTGCACGTCCCCATTCTTGCGCCGCGTCACGAAGGGGTTCTCCTCCACGGGGTTGAGATAGTCTGCGCCAGGAGACAAGAGCGTGAGACAGAAGGAGATGGAGACCTGGGGTTAGCGGGCGTTAAAGAGCAGtcaacatacagacacacaaaacaatccCGGCTCCTGTTCTTTGGCAGCTTCCTCTGCCACGCGGGCCGGAGAAAAGCTCTCCTGGAGCCGCCTCAAGCTGTGCCACCGCAGACAGATGCTGGGAGCACAGAGCCAGAGAGCTGACGTCTCAGGGATCACACGAGACGCACGAGCGCTGCCTTTAAGAACACGTGAGTGAGAGACATTTACGGACGGACATGCTATAATCGgctgaaacaaacacaacaatgtaCAGAGGCACGCTGATG

Function

symbol description
erbb4 Enables several functions, including epidermal growth factor receptor binding activity; protein homodimerization activity; and transmembrane receptor protein tyrosine kinase activity. Involved in several processes, including positive regulation of phosphorylation; positive regulation of signal transduction; and protein phosphorylation. Located in basolateral plasma membrane; mitochondrion; and nucleus. Part of receptor complex. Implicated in amyotrophic lateral sclerosis type 19; colorectal cancer; esophagus squamous cell carcinoma; hepatocellular carcinoma; and lung adenocarcinoma. Biomarker of carcinoma (multiple); ductal carcinoma in situ; reproductive organ cancer (multiple); and urinary bladder cancer.

NR:

description
PREDICTED: receptor tyrosine-protein kinase erbB-4 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU157432 True 2014 lncRNA 0.57 1 529899 531912

Neighbor

gene id symbol gene type direction distance location
AMCG00000695 cps1 coding upstream 115104 414444 ~ 414795 (+)
AMCG00000694 NA coding upstream 115471 367576 ~ 414428 (+)
AMCG00000683 unc80 coding upstream 386004 138105 ~ 143895 (+)
AMCG00000681 NA coding upstream 489303 38752 ~ 40596 (+)
AMCG00000680 NA coding upstream 503618 21907 ~ 26281 (+)
AMCG00000702 vwc2l coding downstream 579969 1111881 ~ 1133185 (+)
AMCG00000705 NA coding downstream 694405 1226317 ~ 1233934 (+)
AMCG00000708 NA coding downstream 716829 1248741 ~ 1249425 (+)
AMCG00000704 NA coding downstream 724869 1256781 ~ 1272965 (+)
AMCG00000715 NA coding downstream 863484 1395396 ~ 1395970 (+)
G125597 NA non-coding upstream 42696 456502 ~ 487203 (+)
G125565 NA non-coding upstream 174170 354488 ~ 355729 (+)
G125516 NA non-coding upstream 400772 128859 ~ 129127 (+)
G125510 pofut2 non-coding upstream 412597 116111 ~ 117302 (+)
G125485 NA non-coding upstream 437279 92283 ~ 92620 (+)
G125612 NA non-coding downstream 43378 575290 ~ 575492 (+)
G125613 NA non-coding downstream 64875 596787 ~ 597135 (+)
G125684 myo1b non-coding downstream 772183 1304095 ~ 1307335 (+)
G125713 NA non-coding downstream 791591 1323503 ~ 1328639 (+)
G125736 NA non-coding downstream 894721 1426633 ~ 1426943 (+)
G125561 NA other upstream 126308 339640 ~ 403591 (+)
AMCG00000723 crygs,LOC107756035,LOC107663530,LOC105911960,LOC103033891 other downstream 1067784 1599696 ~ 1606031 (+)
AMCG00000729 satb2,LOC107690605,LOC107569722 other downstream 1136933 1668845 ~ 1698573 (+)
AMCG00000734 NA other downstream 1273495 1805407 ~ 1814157 (+)
AMCG00000848 NA other downstream 4929389 5461301 ~ 5465981 (+)
G127134 NA other downstream 8085287 8617199 ~ 8620195 (+)

Expression


Co-expression Network