G125767


Basic Information

Item Value
gene id G125767
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 1594823 ~ 1609210 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU157646
gcttaaacattttattctccATAATCTTCCAGCTTTCCTTCCCagaccaaaaacaacaaaaaaaaaagtatatacagaCACAGTAACACAAATATGAAGTGAGAGGGCGGGGGGGAAACAAGGGGCACCTAGAATGGAGAGGCAGAACGGTGTGTCTGGGTGTCTTTATCGCGGGGCATTTGTGTTggtgttcaatctggggtccaTGTCTGTCTCACCGGGGCCGAGCCTGAGTCGTCCACACCGCGGGCGATTCGAGCCCACAGCCGCTCCGACCCCTGCCCTGGGTCCCGCTGGGGTCTGGCTCCGGCACTTGCCCCCGCAAGAGTCTTCCAATTCCCATGTCCCCCCTGATTCCCAACAACAATCACAATCACTTAATGTTTTaggtttaatttactttttttgaaTGATGCCGATTATGTGGCTGTGTAGAGTGCCTGAAAGGCAAACGGGACGGCTGCAGGGCGTGTCCTCACAGCCCACCGGGACGGGAGAACAAAGGGGCAAAATGCAAAGATCCACGAAAGGAGGGTGGGCGGACACTATTATGCCAACCCCACCACTTCCTTCTGTGCAGAGAGCTGTTGGCGAGGAAcaggaagttaaaaaaaaaactcagacaGGACGAGGCAACCGCCCCCCGCTCTGAGAGGAAGGAAGACTCGCAAACCAACGCTTGATGCTGCGCTTGGGACAGCAGGGGGGAGGGAGCGGATCTGATAcaggggagggggcaggggagTGGGGTCTCTACTTCTCACGCTATgtaggggagggggggtgctgcCTAGGGGAGAGGGGCAGGAGAAGCCACATTGGAGTTTTTAATTTGTCCGTtactttaatcaaataatactaataatgaatAAACTCCGCCCATTCTCCATCCACACTTATTGGCCGATTGAAGGTGTAAATTAAACAGTGAACATGTTCTGATGATAATTAAATTGACAGCTGCAGGGCCAGGGggagtgaggaaaaaaaaacatccttttaTTGACTGTAGCTGCGGGCCACtgcacaaacgcacacacaacacactctcGCACCTCCTCGACGCACTGCAGACAGCGATACCCAGGGCGCCATTTCTTTATCCATCGAGCCCATTCAGCAGCTGATAtttctccaccccccccccctctggaAGCAGAAATGGCAGCAGACTCGAGGTCCCCATTAGGACCGGGGGGTGCGGGAGCTGCTCGCCCATTAATAACGAGGTGTGCGCTGATCTAATTAACTGAGATGGCCGatgaataaataacactaaTCGTCCTCGGGGGAAACgacacaatacagtacaggaCTCCAGTGAAGGGAAAAGCTGCGATTTAATACTGCAGGTATTCAAGGCTCGGGGGGCTGGGAGTAACTGGGCCCGGATCTGGAGCAGACTTCCCTAGGACCTCGGACCGGGCCCCCGCCGAACCAGGTGCGACGCGTCTCGGGCTGCAGGGGTACCTGACTGCGactctgtccctgtctgtctctgcattTGTGTACCATcatctccccgtctctctctcagcctgtcCTGTTTGTTACTCCATGCTGATATTTAAATGATGTGCCATCCAAAAGTACTAGAAAggctattttaaaaatgtcaacaacaacaaaaaaaatctattattacTGCCAAGTATACAAAACCCAGGACTGACTCAatactcttcctcctcctcctcctcctcttcttctccctTACTCTCTCAATCCTGGGAATCTCCACCACTTTATGCtggaatctctctctctctctctctctctctcctcagtgcAGAATACtgccctctctcctcctctctcctctctcccacGGTGGCGGTGGGGCAGGGTGATTGGGGGGTGAggagagaggaggggactggactggacagggATAGACTAAGCTGGactgtctctctcctcttctaAATGTAAGTGGACAGAGGTGTAAGTTTCTTTGCCACAGTGGCATCAAGGGTCAGGTACTGCCAGTCCAAACGCGAACATGCGCTCTCCCACACACCCCTCAGAGACGCTGGGTTTAGGACAGtaccatttcatttcatttattcttttcattttaaacaaacaaacagaaaaaacaagtgTGCTTTACAGAAGGCTTTCACTGCTCGACGAACAGCAGCGCACAGTGCAAACTACAGGCCCTCGGGCCAACTTGGAAGGCAGGAGAACGGAGGCTgagtgtgtctgagtgtctgaGTGTCTGAGTGTCTGAGTGTCTGAGTGTCTGAGTGTCTGGGTGTCTGGGTGTCTGGGTGTCTGGGTGTCTGggtgtctgggtgtgtgtgtgtgtgtgtgtgtgtgtgttagtgtgcgtgtgtgtgtgagtgtgtgaacacacttactttaatatttaaaaacccTGCGCTCCTTCAAATCAGCAGAACggatttcaaatatattaataatctgcAGAGACGCAAcatcaattaaattacaattaccaTTCCCACACAGCATTGCTCTCTACATCCGATTGTCCGTCTCAAGTTGAAATCAGCAGGAAGAGCTCAAAGTACCACCCCACACTGGGGGGCCACACGCCACGGGCAcatgcacaacacacaacacccaCAGGAAGGCCCCTTGCGCCGGGCAGCATGCAGGGCAGCTCCAGGCAGGCAGCCGGTCTGGCGTCTTGTGTCTACGCAGCTGCCCGTGGGTCCTTCAGGATCCGGGGCTGTCCGTGTGGTGCAGGCTTCTAGCCAGCCGCCTGTTTGGTCtcaggtgggggggggatgaGGCTGTCCAGCTGCTGCCTGTGTCCCGACTCCAGCAGCCACTCGTGGAACTTCTTCTCCACCAGAGACTCCAACTGGCGCCGCTGGT

Function

GO: NA

KEGG:

id description
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU157646 True 2850 lncRNA 0.52 2 1594823 1609210

Neighbor

gene id symbol gene type direction distance location
AMCG00000722 NA coding upstream 220 1590362 ~ 1594603 (+)
AMCG00000717 NA coding upstream 19384 1554678 ~ 1575439 (+)
AMCG00000714 ccnyl1,LOC107698526,LOC107733650,LOC107738507,LOC107663902 coding upstream 131186 1452612 ~ 1463637 (+)
AMCG00000713 creb1b,creb1,LOC107663917,LOC107551947 coding upstream 147415 1432992 ~ 1447408 (+)
AMCG00000712 NA coding upstream 172707 1413795 ~ 1422116 (+)
AMCG00000724 dnajb11 coding downstream 4627 1613837 ~ 1621391 (+)
AMCG00000725 NA coding downstream 29145 1638355 ~ 1644638 (+)
AMCG00000730 LOC107389566,LOC107095702,LOC101072759,LOC105358294 coding downstream 95584 1704794 ~ 1710396 (+)
AMCG00000738 NA coding downstream 183198 1792408 ~ 1798431 (+)
AMCG00000737 NA coding downstream 215659 1824869 ~ 1830750 (+)
G125736 NA non-coding upstream 167880 1426633 ~ 1426943 (+)
G125713 NA non-coding upstream 266184 1323503 ~ 1328639 (+)
G125684 myo1b non-coding upstream 287488 1304095 ~ 1307335 (+)
G125613 NA non-coding upstream 997688 596787 ~ 597135 (+)
G125612 NA non-coding upstream 1019331 575290 ~ 575492 (+)
G125756 NA non-coding downstream 8598 1617808 ~ 1621888 (+)
G125955 NA non-coding downstream 682625 2291835 ~ 2293872 (+)
G125986 NA non-coding downstream 818460 2427670 ~ 2520585 (+)
G126036 NA non-coding downstream 948782 2557992 ~ 2558257 (+)
G126044 NA non-coding downstream 1157045 2766255 ~ 2766539 (+)
G125561 NA other upstream 1191232 339640 ~ 403591 (+)
AMCG00000729 satb2,LOC107690605,LOC107569722 other downstream 59635 1668845 ~ 1698573 (+)
AMCG00000734 NA other downstream 196197 1805407 ~ 1814157 (+)
AMCG00000848 NA other downstream 3852091 5461301 ~ 5465981 (+)
G127134 NA other downstream 7007989 8617199 ~ 8620195 (+)
AMCG00000949 NA other downstream 8491073 10100283 ~ 10154187 (+)

Expression


Co-expression Network