G126054


Basic Information

Item Value
gene id G126054
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 3010243 ~ 3068463 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU158038
gcgcacacacacacacacacacacacacacacacacacacacacacagtgtcctCCAGTGCCTCCTATGCCTGGGGAAGGTGGGAGACCTCAATCTCGGGACATCATTGCCAGCCCTGTATTGCAGCTCCAGGGATGCCCTCGTTCTGCTCGATGCGATTCTGAAACCCTAGGATTGAAACCCTGACTGGTCAAACACCGCGCCACCCTGCCTTCTGGCCCTCTTCCCTTCTCGCTCTAAACACATCCATAGTCTTTGCTCAGCTTCAGgacattcaaacaaaaacagacgTTTAAATGCACCTCTTCACTTTGTCGATACCTTTTCTTCACAGCGGTCCACTCGGACACTTACTGACCCAACTGACGCTCTTCAACCTCACCCTTTCCTTCTCAAGAACACATGCCttcctttcttctctctctctctcttactacGAGACCCATCCTTTGGCACTCCATGGCTTCCTCTGTACTGTACAGCATTTGCATCATCCAAGATCTCAATGAGGACAGCTCTGGGCTCTTGCGTAACGAGGCACTAGATGGCACAGGCGGCTCataggtttgtttttctgttacagCTCTTTTTACCTGCTCAGCTATTGCCTTCAACGCCAGCGAATCTAAACCCTCAACGTCAACGAACAATCGTCTCGCTGCCGAGGGACAGACGCCGTGTCTCGGGATCTGACCCGGGACGGGCAGGCCGTGCACAGAGACGCCACACATAGTCGGTGTCTGCTGTTTTGAAACCCTCGCAGCACGAGGGGAAGTTCAAGGGGAACACGGGCCGGAAAGGCTCACGATTGTGAAACCGTTCTACTTTGCAGTGCTCACTTACCACCCCGGGCGCTGGAGCGACCTCAGAGCGGAGATCCACGGTAAACACAGACACCGAGGGCACACCCTGATCCTTTCAGTGCGTTCTGATGCCAATGAAAGAGAATATATCGGGGCTGAAGAGGATACTATGAGTTTGATTTGCATTCTATGTTCCCCTTCTTGAATGATCCCACATTCCCAGGTTTACGCTATAGGACAGGTGCtggacaacacaacacacaacacaatctcTCTCGCACACAATAATGATTATGATCCAGGACTGTTagttttaatgttctttttccATGCAAAACCCCCCGCGCTGCTCCAACGCCAGGAGTCGGGTCTGTCCAGTCACCCTCCCCTACACCGGGCATGGTCCCCACACAGGAGAACCCAGATATTTTGTAATTCACCTCCTTGACTTTACAATTAGGTCAACCATGTCCTCCCAGAGACACTGCATCACGGGGTGGAGCAGAAAACCtgcatgtattgtttatataaaacagcCTGGTGTGCATGCGAACAacagtataaaaatgtataaaatatgtttttgctgCTGGCTAACAGTTCTTAATTAAGTGAACCTGAGATCTACAaaattttcttttaaagctttccaaaaaaaaaatatatatatataaaaatgacttAACACGACGGTATTAGAATGATTCAAAACGTCCATCAGAGAAGACAGTCCCTTGGTCCGGAGGAGCCTTAACTACCATTGTTCAGATTGGACTTCTGAGCACGCACAACACCCCCCCGCTTGGCCACAGGGATGGTTTCATCCACAGACCTACACAACTCATATGCAGATTGAAGACAAATGTCtcaacaggagagagagagagagagagagagagagagaaggaagttTCTCAATCACTGGAGGAGCAAGAACAGTAAATCGTTAAGAATGAAAGTAAACAAGTTTAATTTGCGAGTCATGTGGGTGGGGTATTTTAACAAAtgacaagtaaaaaaaaaaaaatcccagaacAATAAAGAATCGCTTTATTGCTGTTAAACTCTGTCCCCAGGACAGTGTAGAAGTTCCACTGATAAAAAGTGAAACTATGGCCAGTCGAGCTCTGTCTTTTCAAAAGATAATCCCAGCTGCTGGGCCCTGGAcactcggggggggggggcggggttcCTCTCGTGAATTAAAATGTAGGCACTCGGACCCTCGACGTTATTTCTCGGAGGGTGAACACATGGTGAAGggcaaagctgccattggcacATGACAAGGTGTGAGAGGTCGAGACCCAGTCAGGTAGCCGGTTCAATGCGTCCCGTTCGGATCAAATAAAACCTTCCGTTTCAAAGGCAGGACTCGGTGTCCTGAACAGAGCCCAGCGTTGCTTCATAGGGATCTCAGCACTTTCATGCGTCGTCTGATTGAACCGATCCCAGTTTAGGATGCGATTCAGCACTTTAAATCACTGTACCGCTGCCTGCCGCCCCCCGGCAGACCGCAGGGAGGGAACCCGATGTTCTGCACTTGTTTTAGCTTGTTTGCACTGGGATGTACGTTTGATTCTGcatattgtatttactgtactttgAAACCCATTGGAAAGGTTCTTGTGAAAactaaatcattaattaataacaacaacaagcagGAATGAAAAAAGCTTCAGGTTTTGAGAAGTTGTGCACAATATACAATCATTCCCTGCTCACCTCCCCCATCAACCAAACCAACAGCAGATAGAACTCCATTAAATGCccaaatatattacaaaacaggGAGACTGAAATGTAGCAAAACTTTAGACTAAAGAGTCAGTGCCTTTTTCTTTCCTAGGTTTTCTCCAGCGGAGTCTGATTGGTGAAGGTTTATTCCTAACCACGCTCAGGCAGGCAGTGGGCCGCTGACCAGTGGGCTCTCACAGGGGAGTCAGAGACTTTAACCTTGAAATCAAAACGCTACTAAAGCCGACTGCTCAGCAAATAGCGTTTCTCTAGCACGATCGCTCTGAGCAGCACGACTCTGGCTTGCATAGCTCATTTAAAGGTGACTCAGACTGCAGCTTGTCGGAGACCACAGAACGTGGCCGAATTCCTCTCCCTGCTCTGCCGCACGGAGTCCCGTTTCCCCGCGGAGGGTAATTATCATACTTCAGTGAAAATGAAACTGGCCGCAGGCTGTGCCGCCACACCCAGGCCTGCAACGCCAGGCACGGGCACGGGGGCAGGCTCTGCTTCGCCCGGTTTCCAAAGGGCGCAATCGTGTGGCGGCCCCAGGGGCGTGCTTCCCTATGCCACAGCTCAAGGGGCCTTGGCAGGGACCCCCACACCGgtttacacacacagaggggCCCCAAAGACTGGGGGGCTCTCTCAGCTTCCTCTGGAGAGGAAATGCCCCTTTCAAAATAGTTTTACCCCACCTGCATCaaagacttaaaataaaaatggctaaATATTATCAGTTTGGAACTTAACTACCTTATAAGTGCACCGTGACAACCACAGGCCAAACCGTGGCACAGAGAGGTGAGAGGTGTGCATCACGGCACTGTGGACCCCTTTCCCACCGGGGGGAAACTTAATTCTAATTTGCATTTTACCCCAAGTGCAAAATCCAGGCCTTCAATTCATATTGAGTGTCAGCGCCTCTTCTTGGCAAGGCCTCGGTATTAAGAGCAGGGAGAAGAAGTCTACCAGGAAGGTCCGACACACCGCCCATTGCTGGCACACCCCGCATGGCATGCAAATCAAGGCAAATCACACTTATCAAATTAGTCGGAAACCCATACGTACagttaaaatagaaatacatttgttttgtaaagcgTAGAATACTCCACGTCTTGTCCCATTAAATATCCCTCTTAAACACCCTGCGTGCCACTGAAGCACAGACACCTTTTCCAGTTGATCCACAGAAAGCAGAATACCCACAAACACAGGCCCCTGTCCGACAGACACACCCGCGGCTCCAAACAGGAAATACAGGTTTCTACCCCCTTCCAGTTTTTAGTTAAAATACAGAAGCTCGTTTAATACTTGAATCTCTAGGCAGGGATTTGAGAGACAAGGCGTCTGGTTTCGCCCATTAATGAAGATTGAGATGGAATTTCCCACTCATTTTATACACTGATATAATCGTGCttcatgcaatttaaataaataaaaggaggGACTAATATATaaaagagaattaaaataaacactgataaCACAAAcgaaaccacacacaaaaacaacaactcttaTTGGTGCTGTGCTTACATctgcagtttaaataataacagtacaaaatgccttttttgcctggaataaaataaaataaaatcatttgcGCTGAGAAACGCTCCCTAAAGGTTGAGTTCGGGGAAAAAAACCATCCGAAGCCATTAGTTTCACCTTAATCTTTGGGTGCAGCTGAACAAGTTTCGAATTCTGAACCCCGGAGCGGTCAGACCGAGACTCCGGGGACGTGGACGGACGGACAGGAAACGAGGGGGACAGGAGGTGCGGCCGGACCCACCACACCCCACCGGCAGAGCGTCCTCTCCAGTCTCTGACAAAGCCCTCCGTTCCCGGGGGTCCGGCCGCTACTGTATGCTCTCGCCCCCCACCACCGACTCGTCGAAGCGGAACCTCTTTGCGAAGGGCGACTCCAGGAAGTTCTCCTTGTCCTCCTGGGCGGGGGGGTGGCCCCACTTGCCGGAGCTCCTCTCCCGGGGGCCGCGGCTGGGCTGGGGGGTCGGGGGGCCGGAGTCGGGGCCACACAGCCACATCCAGGGGTGGGTGAGGCATTCGGCGGCGCTGGGCCGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU158038 True 4634 lncRNA 0.49 2 3010243 3068463

Neighbor

gene id symbol gene type direction distance location
AMCG00000766 tmeff2,LOC106581686 coding upstream 32332 2960489 ~ 2977911 (+)
AMCG00000764 dnah7 coding upstream 491215 2467362 ~ 2519028 (+)
AMCG00000760 LOC106581656 coding upstream 547759 2423045 ~ 2462484 (+)
AMCG00000761 NA coding upstream 619780 2389675 ~ 2390463 (+)
AMCG00000762 NA coding upstream 628233 2345321 ~ 2382010 (+)
AMCG00000774 hspd1 coding downstream 53885 3122348 ~ 3133195 (+)
AMCG00000772 sf3b1,LOC107731751,LOC106586372 coding downstream 73794 3142257 ~ 3155509 (+)
AMCG00000773 NA coding downstream 89953 3158416 ~ 3181118 (+)
AMCG00000781 NA coding downstream 145697 3214160 ~ 3225281 (+)
AMCG00000783 NA coding downstream 157850 3226313 ~ 3233199 (+)
G126050 NA non-coding upstream 125059 2870916 ~ 2885184 (+)
G126044 NA non-coding upstream 243704 2766255 ~ 2766539 (+)
G126036 NA non-coding upstream 451986 2557992 ~ 2558257 (+)
G125986 NA non-coding upstream 489658 2427670 ~ 2520585 (+)
G125955 NA non-coding upstream 716371 2291835 ~ 2293872 (+)
G126068 NA non-coding downstream 13283 3081746 ~ 3083587 (+)
G126215 NA non-coding downstream 487103 3555566 ~ 3558424 (+)
G126240 NA non-coding downstream 584210 3652673 ~ 3656581 (+)
G126248 NA non-coding downstream 602339 3670802 ~ 3673176 (+)
G126301 NA non-coding downstream 657457 3725920 ~ 3730056 (+)
AMCG00000734 NA other upstream 1196086 1805407 ~ 1814157 (+)
AMCG00000729 satb2,LOC107690605,LOC107569722 other upstream 1311670 1668845 ~ 1698573 (+)
AMCG00000723 crygs,LOC107756035,LOC107663530,LOC105911960,LOC103033891 other upstream 1404212 1599696 ~ 1606031 (+)
G125561 NA other upstream 2606652 339640 ~ 403591 (+)
AMCG00000848 NA other downstream 2392838 5461301 ~ 5465981 (+)
G127134 NA other downstream 5548736 8617199 ~ 8620195 (+)
AMCG00000949 NA other downstream 7031820 10100283 ~ 10154187 (+)
AMCG00001002 myo3b other downstream 8931201 11999664 ~ 12011425 (+)
AMCG00001022 NA other downstream 9220487 12288950 ~ 12385042 (+)

Expression


Co-expression Network