G126068


Basic Information

Item Value
gene id G126068
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 3081746 ~ 3083587 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU158053
ctttttattttcttaaaagtcATTCATTCAGACAGCATTCATAAATGATTGTTTCATGATATACACATTCAATCAGAGTTCGGTTATTCTACCTgcgtgtgagtgagagtgtgtgtgcgcacgtGTGGGCCTGCATATGTGTGGGCGTGCttagtgcgtgtgtgtgtatgctttaATCTTAAGCTGAAATGAGAACGGGACATTTCCATTTTGGTTtgttgtaataatattaataataaaacttaaataattcttatttttataaaagcatTGTCATACCATGCTGAAAAGGCAGATTTGTGTGTAGTGTCTTTATTCACAGCGGTGTCTGTTGCTGACTCACGGACACCAGTGTCTTTTACCGAGATAACATCACGTTCTGAGCAGACCTAGGATATCGGAATGGGAGACGGTGAGGGGAAGGGGGTTCTAGAACTGCCAGAACAGCAGGGAGAAATCTAGAACCTTGGGAACAGCAAGGTCGGTTCTAGATCATGATTTCTTGAACCCTCAAAAGCAAgacagaaaggagaaaaaaaaaaaacagtgaatcCTAGAACCGTCAAAAACGACGCGGTGAATTTGAGAACTCTTCGAACAGCCGAGTGTTCCAGTCACAAAAGGCTACAATACAAAGCAAACATCTGTAGAAAGAGACAAGAGTTTTCCAGTCagtgtgaaacattttaaaatatagagaACATTTTGATTCGTATGAGACATTCAGCAACGTGAGAATCACCCGTAGAAATACACTGAAGTGAGGGGAGTGGGGGTGCGGTCGGACGGCGTCGTGGGTGAGAGAGGAGGACGGGAGTGCGTCCGTATAGATAGGTGCATCGGTGTCTGGGACCAACGAGAGCAACAGCACCCCCTCCTGGTGGTCAGAGTACACCCTCCCTCACTGGGGATTGTTGTGTTCCTTCACAGAGTCACAGGCGGGGGGACGGAGACGGAGACTGTTCAGTGTGAGCCTGTCCCGGGGCTGGGCAGgggtagacacacacacacaaccggGCAGGGAGAGGACAACCCCGCAGACCCGCGCCATATATCCGACATCCAAGCCTTCATCATTTTAGCGATTACCCCCCCATAAATCCGCCATCACATCCTTtggaattcatattttaaatattaaaacatgagtCTGTCGCAGTTGTGTGTTCgtgttttcttttcctgcttGCCTTGCTGTGATTGGTGGTGGAGTTTTAGTCCTGGACTCCCATTGGAAGCTGAGGTTGCAGGAGGGCGGAGTTAAGTGCAATGGAGGAAGAAGAAAGGATTGTAAGATTTGCAAAATGACTCCCTTTTCTGGTTTTGTACAGTCTGACATCCCTACAGCCCAGGGTGAACTTCAGGAGTGTGCAGGGTGGCGTTAATGGCTTGTGTCCTGAAGTGTGTTTGACTAGAAGAGTGTTTGACCACTGCTCCTATCTCCCCCATCCCCCACGGACACGATCAACACGATAAACACACTGACCACTGACTGACCCCCTCGGCCACGAAGAGCACGCGTGTCTCTGAGATTGCCCTGTGCATACGTATATACGTGTTCTTCCCTGCATGCCGGCCAGCACGGGGGGAACGTGCATCAGTGCATGTGGATCCGTGTGCCTCCAGTGAGTCCCGTTCCTGAGCCCGTCCTGAGTCCAGAGGTCGAGATCTGGGGGGGTCACTCCAGGCCGAAGGTGCTGGTCTCCTCCACAGCGGTCAGCATCTTCTCGTACAACATGGAGAACGAGGGGTACGGGGGCAGGTCCAGGCGGTTGAAGCAGGTGTGAGCTCTGAgagatagagacacacac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU158053 True 1811 lncRNA 0.49 2 3081746 3083587

Neighbor

gene id symbol gene type direction distance location
AMCG00000767 NA coding upstream 20034 3056422 ~ 3061712 (+)
AMCG00000768 NA coding upstream 44013 3024518 ~ 3037733 (+)
AMCG00000769 tmeff2a,tmeff2,LOC107670719,LOC107728299 coding upstream 70386 2996513 ~ 3011360 (+)
AMCG00000766 tmeff2,LOC106581686 coding upstream 103835 2960489 ~ 2977911 (+)
AMCG00000764 dnah7 coding upstream 562718 2467362 ~ 2519028 (+)
AMCG00000774 hspd1 coding downstream 38761 3122348 ~ 3133195 (+)
AMCG00000772 sf3b1,LOC107731751,LOC106586372 coding downstream 58670 3142257 ~ 3155509 (+)
AMCG00000773 NA coding downstream 74829 3158416 ~ 3181118 (+)
AMCG00000781 NA coding downstream 130573 3214160 ~ 3225281 (+)
AMCG00000783 NA coding downstream 142726 3226313 ~ 3233199 (+)
G126054 NA non-coding upstream 13283 3010243 ~ 3068463 (+)
G126050 NA non-coding upstream 196562 2870916 ~ 2885184 (+)
G126044 NA non-coding upstream 315207 2766255 ~ 2766539 (+)
G126036 NA non-coding upstream 523489 2557992 ~ 2558257 (+)
G125986 NA non-coding upstream 561161 2427670 ~ 2520585 (+)
G126215 NA non-coding downstream 471979 3555566 ~ 3558424 (+)
G126240 NA non-coding downstream 569086 3652673 ~ 3656581 (+)
G126248 NA non-coding downstream 587215 3670802 ~ 3673176 (+)
G126301 NA non-coding downstream 642333 3725920 ~ 3730056 (+)
G126368 NA non-coding downstream 1161145 4244732 ~ 4245036 (+)
AMCG00000734 NA other upstream 1267589 1805407 ~ 1814157 (+)
AMCG00000729 satb2,LOC107690605,LOC107569722 other upstream 1383173 1668845 ~ 1698573 (+)
AMCG00000723 crygs,LOC107756035,LOC107663530,LOC105911960,LOC103033891 other upstream 1475715 1599696 ~ 1606031 (+)
G125561 NA other upstream 2678155 339640 ~ 403591 (+)
AMCG00000848 NA other downstream 2377714 5461301 ~ 5465981 (+)
G127134 NA other downstream 5533612 8617199 ~ 8620195 (+)
AMCG00000949 NA other downstream 7016696 10100283 ~ 10154187 (+)
AMCG00001002 myo3b other downstream 8916077 11999664 ~ 12011425 (+)
AMCG00001022 NA other downstream 9205363 12288950 ~ 12385042 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_022713 HECW1 coding NC_007135.7 CM002908.2 673161 ~ 736994 (+)