G126215


Basic Information

Item Value
gene id G126215
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 3555566 ~ 3558424 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU158251
CTGTATAACATGTTGTGGacaagtcattttaaataaaccatctACTTCCTTGTATTCGGGTGTTGCTGCTTGTAAAACCACTGACAGACATCCCTGGCCTCCTGTCATGGCATCCCAGTGTTTTGGGAGGTCCAACTGTTTGgctgtaaagtaaaatgaaaaGGCCAGATGGAAGGAACACCTTGAACTGCGTCTTGTGAATGGTGATGAAGACATCCTCCTGCTGGTTGCCAAGAGCCTGCTCCAATTTGAGGTTGGTGAAGGTATCAAAGGCCTGGAACTTGTCCCCCTCCTGGTACTGCCACTCCACCAGGTTCTTGGTCAGCTCAGCGTCACGTTTCAGAGTGATATCATCGCGGATCTTCGTGATCATCGCCTGGATTTCTTTGTTGGCCCACAGCACGTCTCTGGTCAGGCCGGCTACCTTGACGTAGGCCTGAGTGGAATTGCACTCCAGCTTCATGGTCACCTGGAGATTCCTCTGAAGGTCGATGATCTTCTCGTGCTCCTCGGGGGTGAAGTTGTAGATCATATCACTGTCGATGGTTACCTCCTCCTGCTCCTTGACGATCAAGTCTTCAATCCACTCCTTCGCTCTTTCTACGCTTTGCCTCGTATCGCCGCAGATATGGAAAATCGCTGGATCAACCTTGTCCTCCAGGATGACAAACtcctttgtttgattttcctCTGTTTCATTAGTGTCCCAACTAAAGAAGGCTGCAGAAACAGaGACCTGCTTTGAGGGAGAACTGATCGTTCGAGGAGTTCACGATGACGTCAGTGCTCTCCTTAGTGATGTCCCCGGTGCTGACCTGCAGCAGGACCCCTCCGATCTTCATCTCATGTACGCCTAGGTTTGGAGAGGAGATCTTCCCATAGAACCCTAacacaaggaaaaaaacagctgcCTCAAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU158251 True 918 lncRNA 0.49 3 3555566 3558424

Neighbor

gene id symbol gene type direction distance location
AMCG00000793 NA coding upstream 8328 3533139 ~ 3547238 (+)
AMCG00000791 NA coding upstream 33213 3517722 ~ 3522353 (+)
AMCG00000792 NA coding upstream 50601 3490741 ~ 3504965 (+)
AMCG00000789 LOC102295795,LOC102199121,LOC101478098,LOC102798094 coding upstream 73024 3437283 ~ 3482542 (+)
AMCG00000786 NA coding upstream 169667 3378438 ~ 3385899 (+)
AMCG00000790 NA coding downstream 10989 3569413 ~ 3575908 (+)
AMCG00000798 NA coding downstream 24756 3583180 ~ 3592142 (+)
AMCG00000797 NA coding downstream 79746 3638170 ~ 3651877 (+)
AMCG00000799 NA coding downstream 98443 3656867 ~ 3660538 (+)
AMCG00000806 c1ql2,LOC104939125,LOC102789465,LOC100698439 coding downstream 127835 3686259 ~ 3698536 (+)
G126068 NA non-coding upstream 471979 3081746 ~ 3083587 (+)
G126054 NA non-coding upstream 487103 3010243 ~ 3068463 (+)
G126050 NA non-coding upstream 670382 2870916 ~ 2885184 (+)
G126044 NA non-coding upstream 789027 2766255 ~ 2766539 (+)
G126036 NA non-coding upstream 997309 2557992 ~ 2558257 (+)
G126240 NA non-coding downstream 94249 3652673 ~ 3656581 (+)
G126248 NA non-coding downstream 112378 3670802 ~ 3673176 (+)
G126301 NA non-coding downstream 167496 3725920 ~ 3730056 (+)
G126368 NA non-coding downstream 686308 4244732 ~ 4245036 (+)
G126500 neb,LOC106518889,LOC106951376,LOC103134835 non-coding downstream 1318443 4876867 ~ 4880503 (+)
AMCG00000734 NA other upstream 1741409 1805407 ~ 1814157 (+)
AMCG00000729 satb2,LOC107690605,LOC107569722 other upstream 1856993 1668845 ~ 1698573 (+)
AMCG00000723 crygs,LOC107756035,LOC107663530,LOC105911960,LOC103033891 other upstream 1949535 1599696 ~ 1606031 (+)
G125561 NA other upstream 3151975 339640 ~ 403591 (+)
AMCG00000848 NA other downstream 1902877 5461301 ~ 5465981 (+)
G127134 NA other downstream 5058775 8617199 ~ 8620195 (+)
AMCG00000949 NA other downstream 6541859 10100283 ~ 10154187 (+)
AMCG00001002 myo3b other downstream 8441240 11999664 ~ 12011425 (+)
AMCG00001022 NA other downstream 8730526 12288950 ~ 12385042 (+)

Expression


Co-expression Network