G126275


Basic Information

Item Value
gene id G126275
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 3550840 ~ 3552977 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU158325
TTTGGCTAGAAAAATTTATTTACCTGCTTGAAtgtgtaaaattataaaaaacatactatataacattttattttgtacattttaagagATGACTATGCAGGTGTACCACAGTATGATTAACAGAACTGCACAGATTCTCAGCACTTCATTTACAACTTTCAAGAGATTTTTCTTACAATTACATATAACCAATATGTCAACTATAAAGTTAGCATGACACGGCCAGGGTGGACAGGCAAAGGTGCCCACTGGGGTATGGGAACAGGCGAGACGGAGACAACACACACCAGTCCAAACTCACATCTATTTACACCAGCCTTACAGTAAGTACATAACACTGTACAGCTGTGGCCCTTTGAGCAGACTTGCCTCTATAGTACAGTAGCCTGCAAAGAATGGGGGAATAAAGTAGaacaaaaataagttatttggCCACTATCTCCTTTGTTGAACACAGTAAAAACGAAATCCCAATTAAATGATGGCACTTAACCTTCTCTCCAACTGAGTGTATcatcttttccttttaataaatCCTCACAATGTCTCTCTGGTACCTGCATCGCTTCTTCCTCTGATGAATCTGGGCCGGTGTTGTCCATAGAAGTACAAATATTGCACTACATTTGTGATCAGCTTCCACAGCAATATCATGTTCATCTCCCCATTGCACAATACACTGCTGCCCACTATTTCAGATCAGACTGCACGTCTTTTACAATACTcttcttttgcttttcatttagaAATAACAACATTGCCCGAGCGCCATGCACATTTTCGagttaatttacaaataaaaccatgtggtgggaaaaatacatctaaataaaacaaaatgcagtcacttgtgtattcaaaatattactCATAACAGATATTTCATAAATACTTGCAACAATTGACACATTGTATAGAAAATAGCAGTAGAGTAGCGCACTTCAGAAATGGGACGAGTTTATGGTTGAAGCAGCTTTTTCAGTTCACGAAAGACCCACTTTTATGGAAACTCTAAAGGATTAGCTGGCACTGCACCTCCAGAATCTAAGTATTCAGACTGCATGTCTATTATAACTGCTATTTATTAGGGCTGTGTCAGTCGATTAAACACTTTTTACTTGATTGTGTATTTGCTGCTACAGTGGCTAAGAAACATGGCTATGAACCTGGGGTTGCGGGCTTGAGCCCATGCTTTGTTTCGTGTATGTGtgttgactgtgcagtgtacatgtttagaaaaaagcgttttgttatttataccaatcattgtaacgttttatgttcatatttccatttaaaacccCTACTCCActtgtgctagttttattagATCGTCTGACTTCCATTTTTATACCTCGGAGCTTAAAGAGCTATCAGTAAAATTGTGCTTCTAGTGTACCCTATAATCGACagtcagaattaaaaaaaaaaaaaaaaacacctgtgctcgattaaatagagaaaatattgatagtcgattaattaattagttgattaatagacccgATTAATCGATTAATCGAGGCAGCCCTCTATGTACCATGTAATTACGTCACAGTTTGCTTTAACAAAACACGCAGCAATAACACCCCCTCCAGATTTTGAAGTGGTACAGTCTAAGGCATAGCACGTCATAAACACTGGCCAAACTGTTACTGTGTTTACAACCAGAAAATGTGTGGCCCTCCTGCAGCAGCCAGCCAGAGAAGGAGCTGACAGCTGAGAAACCTTTGGCGGACAaccaaaaaatgtatgaataaataaataaaaggctatTGACCAGTAcataaagatgaaaaataaacgTAACACATTGATGAGGACAATTTTCAACCtgcatacattAAACAGTATAGTACGAGGATGTACCCACAGTTAAGGGTACAGTGCGATCAAAGTGTGTCTCTTAAGGCTTAACCGTCGCTGTTTTGATCCGGATGTTTGATGAATGGCTCCTGATTTCAGGAAAAGTATAAACAAGGAATTGTCACAAAACCAATCCTGAAAAAGACGCACTGAACCCGTAGTGCAGCAGGAACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU158325 True 2040 lncRNA 0.38 2 3550840 3552977

Neighbor

gene id symbol gene type direction distance location
AMCG00000794 NA coding downstream 33630 3511119 ~ 3517210 (-)
AMCG00000788 NA coding downstream 236715 3276258 ~ 3314125 (-)
AMCG00000784 NA coding downstream 313204 3233421 ~ 3237636 (-)
AMCG00000785 LOC106586374 coding downstream 345229 3181479 ~ 3205611 (-)
AMCG00000778 hspe1,LOC107690609 coding downstream 427040 3122208 ~ 3123800 (-)
AMCG00000796 faima,LOC107723686,LOC107686598,LOC108425966,LOC108266416 coding upstream 23460 3576437 ~ 3582185 (-)
AMCG00000803 NA coding upstream 41305 3594282 ~ 3611390 (-)
AMCG00000800 NA coding upstream 60587 3613564 ~ 3637244 (-)
AMCG00000801 NA coding upstream 97339 3650316 ~ 3650858 (-)
AMCG00000802 NA coding upstream 109270 3662247 ~ 3667451 (-)
G126037 NA non-coding downstream 992591 2557991 ~ 2558249 (-)
G126005 NA non-coding downstream 1030620 2427941 ~ 2520220 (-)
G126020 NA non-coding downstream 1088352 2460715 ~ 2462488 (-)
G125875 NA non-coding downstream 1723098 1822252 ~ 1827742 (-)
G125845 NA non-coding downstream 1973494 1575361 ~ 1577346 (-)
G126296 NA non-coding upstream 121304 3674281 ~ 3676927 (-)
G126369 NA non-coding upstream 691752 4244729 ~ 4245041 (-)
G126428 NA non-coding upstream 1084390 4637367 ~ 4637640 (-)
G126429 NA non-coding upstream 1084981 4637958 ~ 4638285 (-)
G126430 NA non-coding upstream 1088081 4641058 ~ 4641341 (-)
G126096 NA other downstream 401588 3131714 ~ 3149252 (-)
AMCG00000777 coq10b,LOC107690612 other downstream 410351 3133876 ~ 3140489 (-)
AMCG00000771 nabp1,nabp2,LOC106581684,LOC107718374,LOC106575791,LOC107557546 other downstream 500824 3044167 ~ 3050016 (-)
G126089 NA other downstream 508876 3036931 ~ 3041964 (-)
G126017 NA other downstream 1092957 2451868 ~ 2457883 (-)
AMCG00000804 NA other upstream 70 3553047 ~ 3656561 (-)
G126427 NA other upstream 1083119 4636096 ~ 4636516 (-)
AMCG00000838 cacnb4,LOC108434427 other upstream 1404161 4957138 ~ 4982651 (-)
G126700 NA other upstream 2019728 5572705 ~ 5573027 (-)
AMCG00000888 LOC102209482 other upstream 3136591 6689568 ~ 6733817 (-)

Expression


Co-expression Network