G126296


Basic Information

Item Value
gene id G126296
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 3674281 ~ 3676927 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU158357
NTGTTCAGGGCCGGTCAGTGTCCAGGACTTGGTACGCCATTTTAGACTCCGGAACAAACTACCTCAACATGTATAACCTCGTCAATGGTAGTGGTCTAATCTCGACTCCTGGATTCCACGAGTTTGCCAGCGACAGGAATTGCACCCAGTACTCCACGGCAAAGGAGCACTTAgacttattaattaatttatagtaATAATGCACAACTGATTCATGCAcactacagatttgtaaatataattttattattatttaaatgcaccACATTCGTTTTTTGTCAACTGAAGGCTGCTATGTAATAAAAACCTAAGTGCACACTGTCATAGTTATACACTtaataaactgcatttcagaCTTTCCAAgagaaagcaaaacacacatatgGGATAAATAATAACTATTCTCAATGAAGTGGAAGTTTACAAAACTCATCTCACTTGCACAGTTGAGCAGTGACTTTATGAAGCCGCTTTTAGAAACAGATTAacagattatacatttattgaaatatgtgtataatCTCCCCAAAACCTTTGTGTCCAGAGGTACCTGCTATTTTTAAAGTTACAGGATTATAATTTTTGGTGCCACGTCTTTTACGGCACAGATGCCATTTTAAAAGGAAGCTTCCGCGATCCAACTTCTCACGAGATACGGTTTGCTTTGTTCGAGAATTGGCTGAGCATCCTTACAGTGGGATAAGATATGTTGATCTGAGATACCTGGGCTCCCTTTGTTAGGCATTCAATTACAAATCTGTGTAGCATAGCATCCAATCAAGATTATTTTTGAGTGCTGCAGTAGGCATTGGTGCACAGTATCACTGGAAGACTCCTAATAGgtctgttttttctctgtgcttttttaaaatcctaatttaaaacaataaatgtgtgattgtacctaaaaacaacaaattaatggTATTATGTGGTTTAAACTCACTTAGTATTCTACCCAGAGcctaaactaaaaaacacagaataaagtATAAAAGAAAGTATGGCCCTGGGTTATACCCTGTCAACACTGTTTCATCAGTCTGCCTTTGCTGAATGTGGAAGGTTAAATCCTCAAGGCTAGTGTTGCATCTGTACACTTATTGATGGACAGTTttcaagaataacaaaaaaatgttatggtAGGATTTGTCTGAGCCACTAATGCGAATGTATTCtgaatattgtgtgtgtgtaatcaaaGCAATGCTTGTAGTCAATCAATTTAAGGAAGTGATTAGCTGGAAGAAATTGCCACAACCCTATGCACAACTTCCCTTCCCTACAGGCGTGTTCTTGTGCCATTTAACTGCTCACAGGCTAAACCTCAAGACTGTATTCTTCAAGGTCCTGCAGGAAgcttaatgtaaataaaagtatGTGCAAAACTAATGAGTGTAACACTATATGAGTGGCCTTGAGGTGTTATGTGGTGCTATGTGATATGTCCTAGTCTGTCCCTTAATTAAAGCAGCTTCTCAAATGTCCTTTTAGCTCATTGTACATGGATATCAGATCTCAGTAAACACATGTCCACCCcttcagattaaaacaaatagagaAATATCCTTGGTATTGCTTTTTGCCCTTcaccaaaaatgtaatattcatattCTTCTCTTCATCCCAGCTGACAGCTACATTCGATCACGTTTCATGTCGAACATGTCGGGGACATTTCTTACTGCGTTACATACATAGCAACTGTGTGCTGGAGTGCATTATTATAACTTCTGTTTTTCTGGATGTAAATTTAGGATTCTCATTTTGTATAAATGCAGTTAGTTTGTTTACAAGACTTAAAGTCAGGCCTGTTTAATTTCTATTATTTGGTGTTCATAATGTGTGTATTCTCCTATACTTTCTTTAGACTTCACACACACGTACAGTTGGGTCCATAAATATtcgga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU158357 True 1910 lncRNA 0.37 2 3674281 3676927

Neighbor

gene id symbol gene type direction distance location
AMCG00000802 NA coding downstream 6830 3662247 ~ 3667451 (-)
AMCG00000801 NA coding downstream 23423 3650316 ~ 3650858 (-)
AMCG00000800 NA coding downstream 37037 3613564 ~ 3637244 (-)
AMCG00000803 NA coding downstream 62891 3594282 ~ 3611390 (-)
AMCG00000796 faima,LOC107723686,LOC107686598,LOC108425966,LOC108266416 coding downstream 92096 3576437 ~ 3582185 (-)
AMCG00000807 NA coding upstream 43486 3720413 ~ 3745555 (-)
AMCG00000811 insig2,LOC106582059 coding upstream 214096 3891023 ~ 3894951 (-)
AMCG00000809 htr5a,htr5ab,LOC107684958,LOC107550720 coding upstream 253350 3930277 ~ 3933300 (-)
AMCG00000810 ddx18,LOC107673737 coding upstream 257870 3934797 ~ 3941315 (-)
AMCG00000813 NA coding upstream 391017 4067944 ~ 4088896 (-)
G126275 NA non-coding downstream 121304 3550840 ~ 3552977 (-)
G126037 NA non-coding downstream 1116032 2557991 ~ 2558249 (-)
G126005 NA non-coding downstream 1154061 2427941 ~ 2520220 (-)
G126020 NA non-coding downstream 1211793 2460715 ~ 2462488 (-)
G125875 NA non-coding downstream 1846539 1822252 ~ 1827742 (-)
G126369 NA non-coding upstream 567802 4244729 ~ 4245041 (-)
G126428 NA non-coding upstream 960440 4637367 ~ 4637640 (-)
G126429 NA non-coding upstream 961031 4637958 ~ 4638285 (-)
G126430 NA non-coding upstream 964131 4641058 ~ 4641341 (-)
G126432 NA non-coding upstream 965753 4642680 ~ 4643466 (-)
AMCG00000804 NA other downstream 17720 3553047 ~ 3656561 (-)
G126096 NA other downstream 525029 3131714 ~ 3149252 (-)
AMCG00000777 coq10b,LOC107690612 other downstream 533792 3133876 ~ 3140489 (-)
AMCG00000771 nabp1,nabp2,LOC106581684,LOC107718374,LOC106575791,LOC107557546 other downstream 624265 3044167 ~ 3050016 (-)
G126089 NA other downstream 632317 3036931 ~ 3041964 (-)
G126427 NA other upstream 959169 4636096 ~ 4636516 (-)
AMCG00000838 cacnb4,LOC108434427 other upstream 1280211 4957138 ~ 4982651 (-)
G126700 NA other upstream 1895778 5572705 ~ 5573027 (-)
AMCG00000888 LOC102209482 other upstream 3012641 6689568 ~ 6733817 (-)
G127039 LOC100136012,LOC107575789 other upstream 3952988 7629915 ~ 7645722 (-)

Expression


Co-expression Network