G126445


Basic Information

Item Value
gene id G126445
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 4703139 ~ 4708851 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU158524
tttatcttttgtttgtctttattcatatttatataaatatgaacataattcattatttatattcatatctgtatatatacatacacacatacaaaaggaaaaaaaatagccTTTTTGGCACAAAGATTAGAATGCAAGTACAGTACTTTCCCTCGTCGAAATGTACCACACTACTGCATCTGTCCCAATAGTGTACGAAAAATCAAGCACCAATTGGGTCTGGAACGTGATCAAACCGAGCTGAAGGTGAAGAAGAGACGCAGGGCGAAGGTCAGGGGTGCAAACTGCCCATCGACCTCAGGTACTACAGAGGAGGCAGTTCGTCTACAGAAGAAAGACAAGGATCCTACTGTCTTACTaacctcattaattaataaggCAACAATGTCTCTGGAGTCGGAACGTTCGTCTGTTTGACCGGGGGTTCTGGAATGTACAGCGTTTTTTCTCCATTCATTTCTCTGCAGGAAGTTAGGACTGACTACCAATGTACATCAGCCAGAGATAAAAGCATTTAACGTTTTATATACGAGTTCAATTCCCCCCAGCACGTGTCAGCGTGAGGGATTGACCCCGGCTCTCACAGGCAGTTCAATAACAGCTCCTTCAGGAGAACTCGCATCGCCCCGGGCCAAGGTAAACAGGCTGACGACATTGCAAACTCGCCTCCTTCACCCACGTTCACGCTCTTCAAGACACTCAACGCTTTCATCCGAAATAATGCCTCGGTAGCCGAGGGGAAGCAGAAAATCATCTCAGGATTTCTAAACAGCCCACTGTGTTTCAGTTGTGTTTGTGAACATCACATGCTCGGAAAAAAAACGAAAGGAGAGGAAATGTTTTAAGAGACTCAGTATGGTCACCAGTGGGTTTGGCAAAAACTTGAGGGTGTGGACTTGAGTTACgggaagagagaggaaaaaaaataataattgttaaggGTTTTCAGCACTGAATAAATAACCTGACGTGTTAAAGCAAGGCTGCTTTTACATGTTTGACTGGCCAAATTCAAACCCaattaaacatctttaaaaGAAGGGATTAGTAAATATGAGTTAAGAGCAGATAAACAGTCTTTAAatctaatataaatatttctgtaaGAGTCTTGCTGAACGGGCCTTTTTGGTCAACTGCGCCGTTGTGAATTCATCACAGACTACAAAACATACTAGGTTTAAAATGTGGAATTAAGCCTTTTAAATGAGTTCAGTTCTTCATCTGaaggaataaaaaacatgtaaacatcaTTAATTGCAAGATGGAGAAGAAAACGttaacaatttcaaagattctTCAAAGTAAATATATCAAACATAAGTGCCACGTAAATGTCTTAAAAACTAATAAAGAATCGCAAGAGGAAGGGTTGGCAAATCTGAGaataacaagaaataaatgGACATATTGTGAGTACATGTGGAAATAATTGGAACCAATAATTTAGATTAATTCTACAGTGCCACAGAGTGATTGTTTAAAGGAGACAAACTCATTCTTCCATTCAGAggctttcagtttttctttgctgaaaacataatttgcaCTTTCAgtaaaaactaattattttgtgcagtttcctttcaaaatgtgGGTGATCCCAAAAAAAAGATTCCAGTCGATCACTGGACGAGTCCCAGGGAGTGTCTGTCGTTTATAATGTGTAGTGTCACCACTTTTCTCCGTTGTGTTGCTGCTGTGGGTTGTTGCTCTGACTGGACCGGAACTTCACATTTTGCTGAAACATTCCTTAGCATTGGTCCACACTTGAATTccctTTTTTACACATGCTAATCTGCATAACTGCATAGCTGATAAGAGCCTCTTTTAGATCCTGGTCCTTCTGGCTTTTAAACCGCTCAATGTCCACCCTGGCACTCTGGACGTATTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU158524 True 1895 lncRNA 0.40 2 4703139 4708851

Neighbor

gene id symbol gene type direction distance location
AMCG00000824 NA coding downstream 19498 4669268 ~ 4683641 (-)
AMCG00000825 LOC107714772,LOC106574437,LOC104928565,LOC106575257 coding downstream 52026 4646961 ~ 4651113 (-)
AMCG00000820 NA coding downstream 238395 4429747 ~ 4464744 (-)
AMCG00000821 NA coding downstream 298998 4401739 ~ 4404141 (-)
AMCG00000817 NA coding downstream 315419 4380615 ~ 4387720 (-)
AMCG00000836 NA coding upstream 155349 4864200 ~ 4938788 (-)
AMCG00000835 arl5a,LOC107555355 coding upstream 235366 4944217 ~ 4954174 (-)
AMCG00000839 NA coding upstream 305518 5014369 ~ 5024891 (-)
AMCG00000842 sec22a,LOC107722877 coding upstream 412256 5121107 ~ 5132844 (-)
AMCG00000843 pdia5,LOC107596065,LOC107555900,LOC107661141,LOC107660642 coding upstream 429106 5137957 ~ 5174410 (-)
G126432 NA non-coding downstream 59673 4642680 ~ 4643466 (-)
G126430 NA non-coding downstream 61798 4641058 ~ 4641341 (-)
G126429 NA non-coding downstream 64854 4637958 ~ 4638285 (-)
G126428 NA non-coding downstream 65499 4637367 ~ 4637640 (-)
G126369 NA non-coding downstream 458098 4244729 ~ 4245041 (-)
G126476 NA non-coding upstream 64730 4773581 ~ 4777784 (-)
G126554 NA non-coding upstream 305017 5013868 ~ 5034697 (-)
G126563 NA non-coding upstream 407203 5116054 ~ 5119036 (-)
G126631 NA non-coding upstream 663398 5372249 ~ 5372459 (-)
G126665 NA non-coding upstream 753716 5462567 ~ 5464052 (-)
G126427 NA other downstream 66623 4636096 ~ 4636516 (-)
AMCG00000804 NA other downstream 1046578 3553047 ~ 3656561 (-)
G126096 NA other downstream 1553887 3131714 ~ 3149252 (-)
AMCG00000777 coq10b,LOC107690612 other downstream 1562650 3133876 ~ 3140489 (-)
AMCG00000771 nabp1,nabp2,LOC106581684,LOC107718374,LOC106575791,LOC107557546 other downstream 1653123 3044167 ~ 3050016 (-)
AMCG00000838 cacnb4,LOC108434427 other upstream 248287 4957138 ~ 4982651 (-)
G126700 NA other upstream 863854 5572705 ~ 5573027 (-)
AMCG00000888 LOC102209482 other upstream 1980717 6689568 ~ 6733817 (-)
G127039 LOC100136012,LOC107575789 other upstream 2921064 7629915 ~ 7645722 (-)
G127292 NA other upstream 4710145 9418996 ~ 9419325 (-)

Expression


Co-expression Network