G126476


Basic Information

Item Value
gene id G126476
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 4773581 ~ 4777784 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU158562
TGGTATCTTATACTTTCACTCAAGTTTTATTAATCAGCAACTTCACTACAAAGGCTCAGCAATAATAGAAACAATGTAATCTGCTCTAAACTGTGTTACAAttaaacagtaaatacaaagcACAGTAGGGATCACTGCGCACTCAACAACATCTCCTGCACAGAatttaaagtgcaaaatataCCTTACACATACAGGAAGAAAGAATGTCTTTAGCTAAATCACAAAACTGTAACATTATGATTTTTAACAATTAATCTTAGAAATAAAAAGCTAACAATAATATTGAAGTCAAaaccatttcaattacattagattacattagTCAGCTCAAGTCTCCTGAAACATCTGGATCTACACACTACCCTCCCTCTTCCCACAACGACTGAAAACTTGTGTTCACACCTTGCTGTGTTTTGAAATACTGAATGCTGGGGCACACTGTCCCCTGGTCCAACACCACGTCTCCGAGTTTAACCTCATCAACCTGAGCTATCTTTTACATGTAGAgggggaaatacatttatttgacaccATCAGATAAATCACATCCTTGATAATCCTTGATTAATGCAGATTTCTGTGTGAACTTGTTCAGTATTTCCTTCCTCCACCATAGCCTTGGTCCACAGCTGCTCTCTGGGGAGGTCTGCTGTAAGGGTTGTTGAACCGGGCATTGCTATTGTACGGGTTGCTGCTGTTGGGTTGGCTGTTGTACAGGTTGCTGCTGTACGGGTTTCTGTTGGGAccTCTCAAATCCAGATCGTCATCATACCCTCTTGCGGTGGCCTTGGGGGGATTGGCTGGTTTAGAAGATGTGATGGAGGCCTTAGGGATGGGAAAAGACATTCCAGAATTTCGGAACCCTTGGTTTTGGAACACACTCTGACTTTTGAACTTGCTGCTGTAATTCCCCTCATCAGCATCaccatcgtcatcatcatcgtAGCGGGTATAGTCCATTTTGGGATAGGAAAGAGGCATCTGATTCAATGGATTAGACATCCCTATCCTCCGTTTTTCACTTGTTTTGAAATCGTTTGTCATGTTGAATGTCTTCATAGCGGAGTCATCGGTTTTTGATGTGTCCTTACTCTTTTTGCTCTTGTTCCTGAGAAAACACAGGATCATTATTCACATTATTGTTATAGC
>TU158563
TGGTATCTTATACTTTCACTCAAGTTTTATTAATCAGCAACTTCACTACAAAGGCTCAGCAATAATAGAAACAATGTAATCTGCTCTAAACTGTGTTACAAttaaacagtaaatacaaagcACAGTAGGGATCACTGCGCACTCAACAACATCTCCTGCACAGAatttaaagtgcaaaatataCCTTACACATACAGGAAGAAAGAATGTCTTTAGCTAAATCACAAAACTGTAACATTATGATTTTTAACAATTAATCTTAGAAATAAAAAGCTAACAATAATATTGAAGTCAAaaccatttcaattacattagattacattagTCAGCTCAAGTCTCCTGAAACATCTGGATCTACACACTACCCTCCCTCTTCCCACAACGACTGAAAACTTGTGTTCACACCTTGCTGTGTTTTGAAATACTGAATGCTGGGGCACACTGTCCCCTGGTCCAACACCACGTCTCCGAGTTTAACCTCATCAACCTGAGCTATCTTTTACATGTAGAgggggaaatacatttatttgacaccATCAGATAAATCACATCCTTGATAATCCTTGATTAATGCAGATTTCTGTGTGAACTTGTTCAGTATTTCCTTCCTCCACCATAGCCTTGGTCCACAGCTGCTCTCTGGGGAGGTCTGCTGTAAGGGTTGTTGAACCGGGCATTGCTATTGTACGGGTTGCTGCTGTTGGGTTGGCTGTTGTACAGGTTGCTGCTGTACGGGTTTCTGTTGGGAccTCTCAAATCCAGATCGTCATCATACCCTCTTGCGGTGGCCTTGGGGGGATTGGCTGGTTTAGAAGATGTGATGGAGGCCTTAGGGATGGGAAAAGACATTCCAGAATTTCGGAACCCTTGGTTTTGGAACACACTCTGACTTTTGAACTTGCTGCTGTAATTCCCCTCATCAGCATCaccatcgtcatcatcatcgtAGCGGGTATAGTCCATTTTGGGATAGGAAAGAGGCATCTGATTCAATGGATTAGACATCCCTATCCTCCGTTTTTCACTTGTTTTGAAATCGTTTGTCATGTTGAATGTCTTCATAGCGGAGTCATCGGTTTTTGATGTGTCCTTACTCTTTTTGCTCTTGTTCCTTCTTGACACACATATCAGTCCTGTCGTTAAACCAATAATAGCCACTCCTCCTACAACACTCACTCCAATGAGAATATCTCTCATGGTATCTACAAATGAAATGAGACAATGAGAATTTGTGGAATCATTCATCATATTCTATTGAACTATACACAAATAAGTGCACATTTTGTATGatacagtaaaaatatattCGTTAATTTACAAAGTTATAAAACAGAAAGTACAATAAATTGCAAAACTAATCAATGCTGGATAGATTTACCTTTCTGATGCAAACATATGTCTCTAGCAAAATTTGAAGAAGACTGAGAATATAGTACACAGAAGTATTTGAAGTATTAGAAATATAATCAGAAGAATAACTCACTGTCAGTCTCTGGAACAAATGCATACAGATGTACATTTGGGGACAAGGaacaaaaaagagaataaacatgttagagaaaaaagacaaagataTGAAGGAAGGAAGCTCGGACACAGATTTTGAGTCCATGAATCATGAGTGTATTTAAGTAATAAATTGAAACAAACCCAAGCATTAGTACACTGTATTGATATGCATTCAGACAACCCGAGTAGACACCATTTCAAACTGCTTATCTGTGATCTATTTGAATGTGTCAGGGGTGTTCAAATGGGCATCTGCTTTAACACGGCAGTGTAATTGTTAGTTCCAGGGAATCAACTGTGTGACTTTCTGTCCAGCTGTGGATGCCCAATGAATGTCTGATTTTTAGAAGAATTactttgtaaaatgaaatataaaagcttatttttctaaatatgatGTGTTGCTGTAAAATAACTGATTTGGAAGGACATGATTTCTTATAAAATTGCCTTTATATTCTGTAGAGATACATAAGCTTTCATTTCAGTCTTTTTAACA

Function

GO: NA

KEGG:

id description
ko04614 Renin-angiotensin system
ko04976 Bile secretion
ko04974 Protein digestion and absorption
ko04975 Fat digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU158562 False 1152 lncRNA 0.41 2 4774848 4777784
TU158563 True 2008 lncRNA 0.37 3 4773581 4777784

Neighbor

gene id symbol gene type direction distance location
AMCG00000824 NA coding downstream 89940 4669268 ~ 4683641 (-)
AMCG00000825 LOC107714772,LOC106574437,LOC104928565,LOC106575257 coding downstream 122468 4646961 ~ 4651113 (-)
AMCG00000820 NA coding downstream 308837 4429747 ~ 4464744 (-)
AMCG00000821 NA coding downstream 369440 4401739 ~ 4404141 (-)
AMCG00000817 NA coding downstream 385861 4380615 ~ 4387720 (-)
AMCG00000836 NA coding upstream 86416 4864200 ~ 4938788 (-)
AMCG00000835 arl5a,LOC107555355 coding upstream 166433 4944217 ~ 4954174 (-)
AMCG00000839 NA coding upstream 236585 5014369 ~ 5024891 (-)
AMCG00000842 sec22a,LOC107722877 coding upstream 343323 5121107 ~ 5132844 (-)
AMCG00000843 pdia5,LOC107596065,LOC107555900,LOC107661141,LOC107660642 coding upstream 360173 5137957 ~ 5174410 (-)
G126445 NA non-coding downstream 64730 4703139 ~ 4708851 (-)
G126432 NA non-coding downstream 130115 4642680 ~ 4643466 (-)
G126430 NA non-coding downstream 132240 4641058 ~ 4641341 (-)
G126429 NA non-coding downstream 135296 4637958 ~ 4638285 (-)
G126428 NA non-coding downstream 135941 4637367 ~ 4637640 (-)
G126554 NA non-coding upstream 236084 5013868 ~ 5034697 (-)
G126563 NA non-coding upstream 338270 5116054 ~ 5119036 (-)
G126631 NA non-coding upstream 594465 5372249 ~ 5372459 (-)
G126665 NA non-coding upstream 684783 5462567 ~ 5464052 (-)
G126698 NA non-coding upstream 792160 5569944 ~ 5572133 (-)
G126427 NA other downstream 137065 4636096 ~ 4636516 (-)
AMCG00000804 NA other downstream 1117020 3553047 ~ 3656561 (-)
G126096 NA other downstream 1624329 3131714 ~ 3149252 (-)
AMCG00000777 coq10b,LOC107690612 other downstream 1633092 3133876 ~ 3140489 (-)
AMCG00000771 nabp1,nabp2,LOC106581684,LOC107718374,LOC106575791,LOC107557546 other downstream 1723565 3044167 ~ 3050016 (-)
AMCG00000838 cacnb4,LOC108434427 other upstream 179354 4957138 ~ 4982651 (-)
G126700 NA other upstream 794921 5572705 ~ 5573027 (-)
AMCG00000888 LOC102209482 other upstream 1911784 6689568 ~ 6733817 (-)
G127039 LOC100136012,LOC107575789 other upstream 2852131 7629915 ~ 7645722 (-)
G127292 NA other upstream 4641212 9418996 ~ 9419325 (-)

Expression


Co-expression Network