G126500 (neb,LOC106518889,LOC106951376,LOC103134835)


Basic Information

Item Value
gene id G126500
gene name neb,LOC106518889,LOC106951376,LOC103134835
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 4876867 ~ 4880503 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU158587
CTTGTACATGTTCTGGCTGACTAAATTCTTGACCTGCTGAGCATGGATGATCTCAGGGGTGTCAATCACAGTGGTGTAGCTGGCTCTGTCATGCTCAGCTGAGTGTTTGTACTTCGTCTGGCTCAGAATATCAGTGGCGTTCCTCGCTCTCATGAAGTCAGGGGTGTCTGTTGCCAAAGCCAGCATTCCCTTTCCTTTGATTTCCTGCTCCAGGGACTTCCTGTATTCCCTCTCGTTAAAGATATGAGTAGCATTCTTTGCTCTCAACATGTCCGGAGTTTCCTCTAGTACTGTAAGCCCTTTACCTCTCACACCCTCCTCTAGATCTCTCCTGTACTCTTTCTCTCTGCATGTGCTGAGCTTCCTTTGCAGTCACATAGGTCGGTGTTTCAAAGTCCATCATCGGCTTGCCTCGCTCCTTCTCGTACTTCTCCTTGTACTTCAC
>TU158588
CTTGTACATGTTCTGGCTGACTAAATTCTTGACCTGCTGAGCATGGATGATCTCAGGGGTGTCAATCACAGTGGTGTAGCTGGCTCTGTCATGCTCAGCTGAGTGTTTGTACTTCGTCTGGCTCAGAATATCAGTGGCGTTCCTCGCTCTCATGAAGTCAGGGGTGTCTGTTGCCAAAGCCAGCATTCCCTTTCCTTTGATTTCCTGCTCCAGGGACTTCCTGTATTCCCTCTGTGCAATACAAGaaagatcatttatttattattcagaaTATACTAGTCTGAATTTGCTCGTTCTTGAGAAAAGACCaataatgaacaattaaaagCTCACTGCTGTCCTTAAAAGTATT

Function

symbol description
neb Predicted to enable actin filament binding activity. Involved in locomotion. Acts upstream of or within muscle cell development. Predicted to be active in Z disc. Is expressed in adaxial cell; heart; musculature system; pectoral fin; and somite. Used to study nemaline myopathy. Human ortholog(s) of this gene implicated in nemaline myopathy 2. Orthologous to human NEB (nebulin).

NR:

description
PREDICTED: LOW QUALITY PROTEIN: nebulin

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU158587 True 445 lncRNA 0.49 5 4876867 4880503
TU158588 False 352 lncRNA 0.43 3 4876867 4877646

Neighbor

gene id symbol gene type direction distance location
AMCG00000832 NA coding upstream 13019 4844092 ~ 4863848 (+)
AMCG00000831 tnfaip6 coding upstream 37987 4833357 ~ 4838880 (+)
AMCG00000834 itgb5,LOC106582337 coding upstream 52973 4819205 ~ 4823894 (+)
AMCG00000833 LOC106586391,LOC106582337 coding upstream 72525 4792109 ~ 4804342 (+)
AMCG00000826 NA coding upstream 104858 4752867 ~ 4772009 (+)
AMCG00000837 LOC107580446 coding downstream 144792 5025295 ~ 5034697 (+)
AMCG00000840 LOC107714401,LOC107596066,LOC107661140,LOC107555914,LOC107741932,LOC107660638 coding downstream 159445 5039948 ~ 5048084 (+)
AMCG00000841 adcy5,LOC107555914,LOC107660638,LOC107661140 coding downstream 201353 5081856 ~ 5115984 (+)
AMCG00000844 NA coding downstream 341494 5221997 ~ 5265705 (+)
AMCG00000845 NA coding downstream 435694 5316197 ~ 5332706 (+)
G126368 NA non-coding upstream 631831 4244732 ~ 4245036 (+)
G126301 NA non-coding upstream 1146811 3725920 ~ 3730056 (+)
G126248 NA non-coding upstream 1203691 3670802 ~ 3673176 (+)
G126240 NA non-coding upstream 1220286 3652673 ~ 3656581 (+)
G126215 NA non-coding upstream 1318443 3555566 ~ 3558424 (+)
G126568 NA non-coding downstream 240542 5121045 ~ 5124330 (+)
G126569 NA non-coding downstream 246056 5126559 ~ 5126808 (+)
G126570 NA non-coding downstream 246811 5127314 ~ 5127656 (+)
G126572 sec22a non-coding downstream 248004 5128507 ~ 5130661 (+)
G126573 NA non-coding downstream 251215 5131718 ~ 5131991 (+)
AMCG00000734 NA other upstream 3062710 1805407 ~ 1814157 (+)
AMCG00000729 satb2,LOC107690605,LOC107569722 other upstream 3178294 1668845 ~ 1698573 (+)
AMCG00000723 crygs,LOC107756035,LOC107663530,LOC105911960,LOC103033891 other upstream 3270836 1599696 ~ 1606031 (+)
G125561 NA other upstream 4473276 339640 ~ 403591 (+)
AMCG00000848 NA other downstream 580798 5461301 ~ 5465981 (+)
G127134 NA other downstream 3736696 8617199 ~ 8620195 (+)
AMCG00000949 NA other downstream 5219780 10100283 ~ 10154187 (+)
AMCG00001002 myo3b other downstream 7119161 11999664 ~ 12011425 (+)
AMCG00001022 NA other downstream 7408447 12288950 ~ 12385042 (+)

Expression


Co-expression Network