G126572 (sec22a)


Basic Information

Item Value
gene id G126572
gene name sec22a
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 5128507 ~ 5130661 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU158698
gtttattttgatttcccctacgcTCCCTTTCCCtcggcccttgactgtgacctaacatcctGTCTGCacttgtatacacttgtgtaaattggaacttgtaaaatatattatgccttgaattgcactgtattattgcactttgtattgcacttatatttagTAAGTCTgccatgaaattaataataataataataataataatcataataataataataataataataataataataatgtaacgaTGCTTTGTAAATTGCAGTTTCAATTTAGGCATAAACTTGTTATTGGCCCTGGGTTcaccattacaaaaatatataatactaaaataactttaattgtCCTACCATTCAGACACCAAAACCTCAGACACACAGATTAACAATCCACGTCTTATTAGAGAAGCAGTGCAAGTCTGTTTGAAAGGGCCTTTACATGCATAGCTGCTGTTCATTTTGACTGTTTTAAATACTTACacaactattaaaaaaaaaaaaaaaaaaactttcttaaagaaaatacacaaataaaagagTCCACATGTTTTAAGCAAAATCTTACCTATTCCCTTATATTTGGTGGGCGACGGGTGTGAAAATCCATTGACGGTCCCTACATCTGCAGCTGTGAGCTGGTAGGGCGGTCTGAGCTTGATTTCCGTCTGCATGTCGGCGAGATTAATCTTCGTTGACAGGGACCGAGGGCTGTTGTACCGCTGTTTGGTCTTCTGAATGAAATTATCTtcgattaaaagaaaaatattagtCATTTGATGAAagagtaattatttttaacacgGGTAGAATATGTTTGAAGTTAAACATGGACAAAAGGAACCCACTCACCAAATTCAATGAAGGAGTACGGTCGAACAGCACTGTTTATCCGCTTTGTGTCGTACGAAACGATAAACTCTCGTTGCAGCTCGTCCAGGAAGCAGAAGGCCAGGACATTGGGATAGCTCTCTGTACACACCATCATATAACTGACCCCTAAAGAACTTGTAAAACTAGAATTGATGTTGTACTGTCCAGCTTTCAGCATACACCTGTCAGGAAACTGGCTTAGTTTTTTGGAGAGGTTTTTCAGGTATTTCTTACTCTCCTGCAATCCTTTATCCTGCTCATAATCAGTGGATGCAGACAGAGGGAGACCATCTCGCACCCGGACCACCGAAGCAAACAGGACTGTGGACATCGTCAATCTCTGACACTGCCCACCTGtgtgtagaaataaaatgtggttaCCAGAAATACTGACAAAGAT

Function

symbol description
sec22a Predicted to act upstream of or within endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Orthologous to human SEC22A (SEC22 homolog A, vesicle trafficking protein).

NR:

description
PREDICTED: vesicle-trafficking protein SEC22a

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU158698 True 1266 lncRNA 0.38 2 5128507 5130661

Neighbor

gene id symbol gene type direction distance location
AMCG00000841 adcy5,LOC107555914,LOC107660638,LOC107661140 coding upstream 12523 5081856 ~ 5115984 (+)
AMCG00000840 LOC107714401,LOC107596066,LOC107661140,LOC107555914,LOC107741932,LOC107660638 coding upstream 80423 5039948 ~ 5048084 (+)
AMCG00000837 LOC107580446 coding upstream 93810 5025295 ~ 5034697 (+)
AMCG00000832 NA coding upstream 264659 4844092 ~ 4863848 (+)
AMCG00000831 tnfaip6 coding upstream 289627 4833357 ~ 4838880 (+)
AMCG00000844 NA coding downstream 91336 5221997 ~ 5265705 (+)
AMCG00000845 NA coding downstream 185536 5316197 ~ 5332706 (+)
AMCG00000849 NA coding downstream 266664 5397325 ~ 5404570 (+)
AMCG00000847 NA coding downstream 295500 5426161 ~ 5441254 (+)
AMCG00000857 NA coding downstream 342433 5473094 ~ 5487499 (+)
G126570 NA non-coding upstream 851 5127314 ~ 5127656 (+)
G126569 NA non-coding upstream 1699 5126559 ~ 5126808 (+)
G126568 NA non-coding upstream 4177 5121045 ~ 5124330 (+)
G126500 neb,LOC106518889,LOC106951376,LOC103134835 non-coding upstream 248004 4876867 ~ 4880503 (+)
G126368 NA non-coding upstream 883471 4244732 ~ 4245036 (+)
G126573 NA non-coding downstream 1057 5131718 ~ 5131991 (+)
G126574 NA non-coding downstream 1713 5132374 ~ 5132956 (+)
G126621 NA non-coding downstream 219321 5349982 ~ 5350242 (+)
G126667 NA non-coding downstream 336321 5466982 ~ 5467528 (+)
G126697 NA non-coding downstream 439309 5569970 ~ 5571932 (+)
AMCG00000734 NA other upstream 3314350 1805407 ~ 1814157 (+)
AMCG00000729 satb2,LOC107690605,LOC107569722 other upstream 3429934 1668845 ~ 1698573 (+)
AMCG00000723 crygs,LOC107756035,LOC107663530,LOC105911960,LOC103033891 other upstream 3522476 1599696 ~ 1606031 (+)
G125561 NA other upstream 4724916 339640 ~ 403591 (+)
AMCG00000848 NA other downstream 330640 5461301 ~ 5465981 (+)
G127134 NA other downstream 3486538 8617199 ~ 8620195 (+)
AMCG00000949 NA other downstream 4969622 10100283 ~ 10154187 (+)
AMCG00001002 myo3b other downstream 6869003 11999664 ~ 12011425 (+)
AMCG00001022 NA other downstream 7158289 12288950 ~ 12385042 (+)

Expression


Co-expression Network