G126697


Basic Information

Item Value
gene id G126697
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 5569970 ~ 5571932 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU158853
acaacatcagcaggggatcaaatactattTTCCCTCATTGTAATTGTTggattgctttttttaaattttgttttgtatatttgtatataagaCTTGGTGATGTGGCATATCTTTCTTGTGGCCGGGATTTGAAGGTTGGCTTTTTACAAACTGTTGGAGAGAAGCAACTAAAAACTAAAGTTACGAATAAATGAGCGTAAAGTTTTATATAATGAATACAGTCGGTGTCCAGTTTTTCTGAAGTTTGCAATTTCATGACTGGTGCATTCAGTTTATTTGGACCTATGTCCATTGGGGCTTGTAAGCCACCCCTATCCTGGCTGTAAATGAACCTACACTAAGTGAATtacttaataaaatgaatgccaACATCAGGACAAGTGACCACTAGTACTTCCTCTTAGACAAAGCCTGCTGCAAAGTGGAGAAGCGGGAGGTGGTGGCCATGCAATAAAATGACAACAGGCAAATTTGAGGAGTCTAATATATTTCCTGGTTGgaatattatgtattcatttgaagGGTGGATTCTGTTTTCAGAGAAACAGaatttgtttccagttttgGATATACGTTACAATGGGTGTTACAGTGACTGTCGATTGGCAAAGGGAATTACTGTATAACGTTGTGTCCAGATATACAGGGCACCAACTTTATTAGCCAATATAAAGTCACAGGACTGCCGGGCTTCTAGGATTTACATGCACAAAGCCAGGCAGTTTCAAATAACATGTTGCATTATTAACTTTCCCTGttaaaaacattgcatgtaTTATTTAGCTGGAGAGAGATTTGGAACGTCGTACAGGTGTGCAATTCACAGAACCCTTTAAAAGGAAGTTCTTAGAAAAAGGCAGCCTTCAAAGAACATGCTTGCCCGTAGGCAGATACACACCTTGTTATTTTCTAGGAACTCGACAGGTACAGACACAGCAGACACGAGACCCGAACGCCCTGTACGTGATGAGGTTGCTATACATATTATTTGCTTCTTTCCAAACacagttctttaaaatgttaaagaacaATCATGGGTTTCTGGTTTTGTACATAAGTATTGCTTAAAATGcttgtgacttttttttaattactttttcaatcttgtttttttcttttctttttaatatagaGATGATTTTAATGTTGTACACATAACAGGTAAAGGTATGTATGTGTAAATTCCTGGATAGTGATCCCCTACTTATTACAAGggaaatgagaaaatgtatcaGAGCGTTCTGCAGCTTatgaacaaagcaaaacaaagaggCATAGAGGCACTGATTGAAGAACATAGcgctcttttgtttttgttttttgtttttttactttgactGTCATCGTTCAATCTATGAAGaatgtatgcatattttttcTACAGGGGTGTGtcatgtgttgtttatttccctGTTTGTAAATCATATAAACAATCAGGattcaaaaacatcacaaaactaTTCTTTCTTCAGTTTGATCTCCTTCATGTGTTATGTATTtggttatttgtattcatacattcatacaatcctctgcttttatgtattttcattgaGATTCAAACATGTTCTGTAACTTTAATTCTCTAAAACCAAAtggtaaacatttgtttaaaaaaatatatatattaatatgaaaatataaatgttgttttgctttttagacaatgttgtatacattttataggtCGCATTTCAGATCAGTTTGGtgctatttttttcccctttggtACAAGCCTTTACTTCTTGTAAACTGCCTCCTTTATTTCACTGTAGCAACTGTTTAAAGATTTCTCCATCTTTATGTTTGTGTGGGAGGGACattttgtgggggttgttgaaTAATAACGTTTTTAAgagatgtattttgtaaatgacCAAAAAAGGTATTTTTGCACTGCATCATATTCTTCTTGGATATGCTGCACCAAGCAACAtctaagtaaataaaatagagacttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU158853 True 1963 lncRNA 0.35 1 5569970 5571932

Neighbor

gene id symbol gene type direction distance location
AMCG00000856 NA coding upstream 1589 5557451 ~ 5568381 (+)
AMCG00000855 clasp1 coding upstream 13301 5497622 ~ 5556669 (+)
AMCG00000857 NA coding upstream 82471 5473094 ~ 5487499 (+)
AMCG00000847 NA coding upstream 128716 5426161 ~ 5441254 (+)
AMCG00000849 NA coding upstream 165400 5397325 ~ 5404570 (+)
AMCG00000859 NA coding downstream 245189 5817121 ~ 5824643 (+)
AMCG00000862 LOC107551943,LOC108430494,LOC107663912,LOC107733654 coding downstream 367679 5939611 ~ 5949304 (+)
AMCG00000868 mgat5,LOC103369129,LOC106575089 coding downstream 512059 6083991 ~ 6120281 (+)
AMCG00000867 acmsd,LOC107555338,LOC107723660 coding downstream 609973 6181905 ~ 6189062 (+)
AMCG00000872 NA coding downstream 618038 6189970 ~ 6193791 (+)
G126667 NA non-coding upstream 102442 5466982 ~ 5467528 (+)
G126621 NA non-coding upstream 219728 5349982 ~ 5350242 (+)
G126574 NA non-coding upstream 437014 5132374 ~ 5132956 (+)
G126573 NA non-coding upstream 437979 5131718 ~ 5131991 (+)
G126572 sec22a non-coding upstream 439309 5128507 ~ 5130661 (+)
G126714 NA non-coding downstream 147336 5719268 ~ 5799635 (+)
G126781 map3k19,LOC106586307 non-coding downstream 628977 6200909 ~ 6201605 (+)
G126782 NA non-coding downstream 631766 6203698 ~ 6206033 (+)
G126805 NA non-coding downstream 641250 6213182 ~ 6213407 (+)
G126886 NA non-coding downstream 809042 6380974 ~ 6381195 (+)
AMCG00000848 NA other upstream 103989 5461301 ~ 5465981 (+)
AMCG00000734 NA other upstream 3755813 1805407 ~ 1814157 (+)
AMCG00000729 satb2,LOC107690605,LOC107569722 other upstream 3871397 1668845 ~ 1698573 (+)
AMCG00000723 crygs,LOC107756035,LOC107663530,LOC105911960,LOC103033891 other upstream 3963939 1599696 ~ 1606031 (+)
G125561 NA other upstream 5166379 339640 ~ 403591 (+)
G127134 NA other downstream 3045267 8617199 ~ 8620195 (+)
AMCG00000949 NA other downstream 4528351 10100283 ~ 10154187 (+)
AMCG00001002 myo3b other downstream 6427732 11999664 ~ 12011425 (+)
AMCG00001022 NA other downstream 6717018 12288950 ~ 12385042 (+)
AMCG00001098 NA other downstream 9578343 15150275 ~ 15184392 (+)

Expression


Co-expression Network