G126698


Basic Information

Item Value
gene id G126698
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 5569944 ~ 5572133 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU158854
gctctagtatttttctttatttcatgcTCTATGCACttacagaaaaaaagttgaTGCCAGAATACAGAAGACACTATAACAATGTTTATAGGTTTATAGGTTTAGTAAACACTAAAATGTTTGgtttcaaaatgtctttgttCCATTCCAGGAAGTATTTCTAAGAATATATAAGCAGACACCAAATACaccaaaaattacaaaaagtctctattttatttacttagaTGTTGCTTGGTGCAGCATATCCAAGAAGAATATGATGCAGTGCAAAAATACCTTTTTTGgtcatttacaaaatacatctcTTAAAAACGTTATTAttcaacaacccccacaaaatGTCCCTCCCACACAAACATAAAGATGGAGAAATCTTTAAACAGTTGCTACAGTGAAATAAAGGAGGCAGTTTACAAGAAGTAAAGGCTTGTaccaaaggggaaaaaaatagcaCCAAACTGATCTGAAATGCGacctataaaatgtatacaacattgtctaaaaagcaaaacaacatttatattttcatattaatatatatatttttttaaacaaatgtttaccaTTTGGTTTTAGAGAATTAAAGTTACAGAACATGTTTGAATCtcaatgaaaatacataaaagcagaggattgtatgaatgtatgaatacaaataaccaAATACATAACACATGAAGGAGATCAAACTGAAGAAAGAAtagttttgtgatgtttttgaatCCTGATTGTTTATATGATTTACAAACagggaaataaacaacacatgaCACACCCCTGTAgaaaaaatatgcatacattCTTCATAGATTGAACGATGACagtcaaagtaaaaaaacaaaaaacaaaaacaaaagagcgCTATGTTCTTCAATCAGTGCCTCTATGcctctttgttttgctttgttcatAAGCTGCAGAACGCTCtgatacattttctcatttccCTTGTAATAAGTAGGGGATCACTATCCAGGAATTTACACATACATACCTTTACCTGTTATGTGTACAACATTAAAATCATCtctatattaaaaagaaaagaaaaaaacaagattgaaaaagtaattaaaaaaaagtcacaagCATTTTAAGCAATACTTATGTACAAAACCAGAAACCCATGATtgttctttaacattttaaagaactgtGTTTGGAAAGAAGCAAATAATATGTATAGCAACCTCATCACGTACAGGGCGTTCGGGTCTCGTGTCTGCTGTGTCTGTACCTGTCGAGTTCCTAGAAAATAACAAGGTGTGTATCTGCCTACGGGCAAGCATGTTCTTTGAAGGCTGCCTTTTTCTAAGAACTTCCTTTTAAAGGGTTCTGTGAATTGCACACCTGTACGACGTTCCAAATCTCTCTCCAGCTAAATAAtacatgcaatgtttttaaCAGGGAAAGTTAATAATGCAACATGTTATTTGAAACTGCCTGGCTTTGTGCATGTAAATCCTAGAAGCCCGGCAGTCCTGTGACTTTATATTGGCTAATAAAGTTGGTGCCCTGTATATCTGGACACAACGTTATACAGTAATTCCCTTTGCCAATCGACAGTCACTGTAACACCCATTGTAACGTATATCcaaaactggaaacaaattCTGTTTCTCTGAAAACAGAATCCACCcttcaaatgaatacataatattcCAACCAGGAAATATATTAGACTCCTCAAATTTGCCTGTTGTCATTTTATTGCATGGCCACCACCTCCCGCTTCTCCACTTTGCAGCAGGCTTTGTCTAAGAGGAAGTACTAGTGGTCACTTGTCCTGATGTtggcattcattttattaagtaATTCACTTAGTGTAGGTTCATTTACAGCCAGGATAGGGGTGGCTTACAAGCCCCAATGGACATAGGTCCAAATAAACTGAATGCACCAGTCATGAAATTGCAAACTTCAGAAAAACTGGACACCGACTGTATTCATTATATAAAACTTTACGCTCATTTATTCGTAACTTTAGTTTTTAGTTGCTTCTCTCCAACAGTTTGTAAAAAGCCAACCTTCAAATCCCGGCCACAAGAAAGATATGCCACATCACCAAGtcttatatacaaatatacaaaacaaaatttaaaaaaagcaatccAACAATTACAATGAGGGAAaatagtatttgatcccctgctgatgttgtacgtttgcccactgacaaagaaatga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU158854 True 2190 lncRNA 0.34 1 5569944 5572133

Neighbor

gene id symbol gene type direction distance location
AMCG00000853 LOC106586425,LOC108266238,LOC103360348,LOC102795313,LOC101468032 coding downstream 109140 5450060 ~ 5460804 (-)
AMCG00000851 tsn,LOC107555354,LOC107686515,LOC107555051,LOC107658218 coding downstream 123692 5440030 ~ 5446252 (-)
AMCG00000850 eaf2,LOC106586422 coding downstream 173558 5392602 ~ 5396386 (-)
AMCG00000852 NA coding downstream 178115 5381140 ~ 5391829 (-)
AMCG00000854 NA coding downstream 199789 5354386 ~ 5370155 (-)
AMCG00000858 NA coding upstream 27816 5599949 ~ 5639241 (-)
AMCG00000860 inhbb,LOC106575190,LOC108411664,LOC106574263,LOC105019970,LOC108270543 coding upstream 210219 5782352 ~ 5789779 (-)
AMCG00000861 ralba,ralb,LOC107746258,LOC107597482 coding upstream 227248 5799381 ~ 5811882 (-)
AMCG00000864 NA coding upstream 250405 5822538 ~ 5856287 (-)
AMCG00000863 NA coding upstream 288712 5860845 ~ 5892754 (-)
G126665 NA non-coding downstream 105892 5462567 ~ 5464052 (-)
G126631 NA non-coding downstream 197485 5372249 ~ 5372459 (-)
G126563 NA non-coding downstream 450908 5116054 ~ 5119036 (-)
G126554 NA non-coding downstream 535247 5013868 ~ 5034697 (-)
G126476 NA non-coding downstream 792160 4773581 ~ 4777784 (-)
G126767 NA non-coding upstream 371253 5943386 ~ 5949894 (-)
G126873 NA non-coding upstream 762580 6334713 ~ 6335866 (-)
G126887 NA non-coding upstream 808830 6380963 ~ 6381248 (-)
G126977 NA non-coding upstream 1548111 7120244 ~ 7125041 (-)
G127145 NA non-coding upstream 3066463 8638596 ~ 8639883 (-)
AMCG00000838 cacnb4,LOC108434427 other downstream 587293 4957138 ~ 4982651 (-)
G126427 NA other downstream 933428 4636096 ~ 4636516 (-)
AMCG00000804 NA other downstream 1913383 3553047 ~ 3656561 (-)
G126096 NA other downstream 2420692 3131714 ~ 3149252 (-)
G126700 NA other upstream 572 5572705 ~ 5573027 (-)
AMCG00000888 LOC102209482 other upstream 1117435 6689568 ~ 6733817 (-)
G127039 LOC100136012,LOC107575789 other upstream 2057782 7629915 ~ 7645722 (-)
G127292 NA other upstream 3846863 9418996 ~ 9419325 (-)
G127443 NA other upstream 4702554 10274687 ~ 10278211 (-)

Expression


Co-expression Network