G126714


Basic Information

Item Value
gene id G126714
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 5719268 ~ 5799635 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU158870
gtgtgtgtgtgtgtNtgtgtgtgtgtgtgtgtgtgtgttaagatGTCTGCTCAGCTATTTTATTATAAACGGAATAACCAGGGCAGCAACGCCAATACAACACCTAAGATACAGAGGTGATTCAATCCTTTGAGTCTTCAAAACAATAGTTCTGTTCATATCAAAACTTAGTCAGGTCAAATTGCTTTTAAGCATTTGCCTGCATTGGCCATTAAAGAATTTAAACATTACCAgtactttgttttaaagaaaggttGGGTGGGGTTTTTGGGGGGGGGCACAGATTCCCACTGAACACGATCTCGACGATACAGAGTCACTATAACGAGTCTAGTTTTATTTGTGCATCTACACCGACTCTAGGCAGTGCACTTTCCCGCAACATTtcaatttagttatttttacaaacttaaataaaaaaggacaaatcAACGGTGCAGAGGAGTCGCGTCAAGAGAAATGAATCTGAGTTTTCGTTCAGCTGTAAGACACGGCCGCACGAGAGATAGTAAAACGTGAGTGCAGAGAGTACACAAGATgtcaagagtgtgtgtgtgtgagagagagagaggttatgTTTCTAGGATGCAGTAATGGCTGCTCCTTAGAGAAAGCATAGTATCTGAACACTCCTCCAGCAAAGTCATTTGTGCCAACAGACCGTTCTTCACCCGGTTACTCTGTTCTCACATGACCGACACTAGCCAGTGTCCCAGTTTACCGTACGGGCAGAAACACGTTAAAACAGACAGAACTTTCTACGAGGCGCCGATCAGCGGTTTTCTATACATGGACTATGAAGAATTCTCCAGTTTCCCTGCACGTTGAAGCTAATATGTCGAGGTGGGAAGTGTGAATATTAAGGCAGTAGCTCAATATATTCTCGCACACCGTCAGAGCGAGACTGCGATCGATGGGTGTCACACAGCGACGCACACGTAACACGGAAGGACAGCACATCTAACGAGGAGAAGACAAGGTTAGTGTTGGGAAAATAGCTTCAAAGCTAAATGTTATGTAGAAAAATACAATCCCATGACAAAACACTGTTAAATCTCAATTCACTCATGAGCCGCAGGGCGAACACTCTTGCCTTGAAGAGAAGTTTGACtgattattcatatatatataaaagattcAACGAGTGAGAGTCAGTGTAGTAAGGAACCCAACTGATAactaaacacttttaaaaacactggtTTGTTTCACTTTACACAAGAAATGAGTTCTGATTTTGAACACTTTCCTTTTAGTGGTGACAATTTCTGTACTCGGGGTCCTCGTTCAGATCAAAGCAAACAGCACCGCTCTCTGAAACCTCGCTTAGTCCTGCTGTTCTTGCcatttttgtccttgttttcagACTTCTTTTTCGCTCGGACTTCCCGCATAAGGTCGAAAAACACCTGGGAATAGAAACAGTACTTAAGATACACGTCCGCACCAATTGACAATCAATAACCAATAATTCATCACCAGTACAAATACAGTAGCGAAGCAGTACGCTCAGGAAATCATTATCTAAtcaagtattttaatttcag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU158870 True 1547 lncRNA 0.42 2 5719268 5799635

Neighbor

gene id symbol gene type direction distance location
AMCG00000856 NA coding upstream 150887 5557451 ~ 5568381 (+)
AMCG00000855 clasp1 coding upstream 162599 5497622 ~ 5556669 (+)
AMCG00000857 NA coding upstream 231769 5473094 ~ 5487499 (+)
AMCG00000847 NA coding upstream 278014 5426161 ~ 5441254 (+)
AMCG00000849 NA coding upstream 314698 5397325 ~ 5404570 (+)
AMCG00000859 NA coding downstream 17486 5817121 ~ 5824643 (+)
AMCG00000862 LOC107551943,LOC108430494,LOC107663912,LOC107733654 coding downstream 139976 5939611 ~ 5949304 (+)
AMCG00000868 mgat5,LOC103369129,LOC106575089 coding downstream 284356 6083991 ~ 6120281 (+)
AMCG00000867 acmsd,LOC107555338,LOC107723660 coding downstream 382270 6181905 ~ 6189062 (+)
AMCG00000872 NA coding downstream 390335 6189970 ~ 6193791 (+)
G126697 NA non-coding upstream 147336 5569970 ~ 5571932 (+)
G126667 NA non-coding upstream 251740 5466982 ~ 5467528 (+)
G126621 NA non-coding upstream 369026 5349982 ~ 5350242 (+)
G126574 NA non-coding upstream 586312 5132374 ~ 5132956 (+)
G126573 NA non-coding upstream 587277 5131718 ~ 5131991 (+)
G126781 map3k19,LOC106586307 non-coding downstream 401274 6200909 ~ 6201605 (+)
G126782 NA non-coding downstream 404063 6203698 ~ 6206033 (+)
G126805 NA non-coding downstream 413547 6213182 ~ 6213407 (+)
G126886 NA non-coding downstream 581339 6380974 ~ 6381195 (+)
G126919 epc2,LOC106586324 non-coding downstream 873977 6673612 ~ 6674227 (+)
AMCG00000848 NA other upstream 253287 5461301 ~ 5465981 (+)
AMCG00000734 NA other upstream 3905111 1805407 ~ 1814157 (+)
AMCG00000729 satb2,LOC107690605,LOC107569722 other upstream 4020695 1668845 ~ 1698573 (+)
AMCG00000723 crygs,LOC107756035,LOC107663530,LOC105911960,LOC103033891 other upstream 4113237 1599696 ~ 1606031 (+)
G125561 NA other upstream 5315677 339640 ~ 403591 (+)
G127134 NA other downstream 2817564 8617199 ~ 8620195 (+)
AMCG00000949 NA other downstream 4300648 10100283 ~ 10154187 (+)
AMCG00001002 myo3b other downstream 6200029 11999664 ~ 12011425 (+)
AMCG00001022 NA other downstream 6489315 12288950 ~ 12385042 (+)
AMCG00001098 NA other downstream 9350640 15150275 ~ 15184392 (+)

Expression


Co-expression Network