G126782


Basic Information

Item Value
gene id G126782
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 6203698 ~ 6206033 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU158965
TGCTCTTCACTGGGGGAAGGAGCTTCCTCGGAAATGGCTCTGATTTCATGTGAATAGGCGTCACTGTGTTCAGGTCGGACAACCAAGTCCTTCTCCTCCAGTGATATGAGCTCTTCAGCCAAGCATCGCAATAACTCGTCGGTCAGATCCCCATCTCCAGCGCTGTCGAGAAGTTTCCTGAATGCTGGGGACACCGTTCTGTCACTCTCTGAAGTCCAGGTATTGATTTTCGTCTCAGTTTGGAAAGACTTGGAATTTATCTTCCACTGCGCATCTGTAGCTCCCATCTTCTGACCATCGTGGCAGGTGTACAATCCGCCTTTGTTTTGCTTACTACGAGATGATAGCTTTTCACAGAGTTCGTTCATCGCGTTTTGGTCTTCGCTGGGAACAGCAGtggtgttgtctgtgtgtgtcctggAACGGGCCGTCTCGTCTGTTAGTTGATGTGTTCGGATTTCCTCAACTATTGACAGATTCGTACAGTTCTCCAGGTCCTCAGGAAATATGACCTGCGACTTTGATGTCTTTATGTGCCAGTTTGGGCCAGATATAAAGACAGTGTGTTCCTGTTCGTCTTCGCTGACCACCTGCTTgagatgttttcctttttggaaAACATCTCtcctcttgttttgtttcactgaagcagaattgtttttctccttcacatttttctttaacttaCAATGTTGTATTCCCTTggtacattttgtgtttctgccTCCCAAACTCTTCCTGACTGGAGCAGACTGTATCGCTCTATAGGACCTCTTTTCACACGCAGTGGAGGCCCTGAGGTTTGAGTATACCGGGGTAGCAAACATCTCGTAGATCGCAGGGCCTTCATCATTGGAGTCTATCTCCTGGAACATGTCACTGTAGTTGATCTTTACATAATCTACTGCAGACTTGGCTCTTGGAGTTATGGGGGTTGCTGGCTTCTTAAGCAGACCAGTGCTTTTGTACACACATTGAAGTGGCATCTTCTTAACCAACAGTCCAGATCTCATGAAGCTCTTTCTTTCCACCGGGGATTTGTTTGTGCTCAGCTGGAATGATTTGGCTTGGCCATTTCGAAACAAAGGAAAAGCAGCGCTCCTTTGGGTGATTCTGACAGCGTTTGTTTTGGGTGAGGCTGGTTTTACTGCACCCTCACCATCGATGATCAACTCCTGATGTGTCCTGATGTTTGTGTTCATATGTGATGGGGCACATCTATTCCTGAGAttgctttttgtctttttgctgTGCTGATGGTGCTCTTTGTGAGCCAAGATGTTGAAGGTTTGATTGACGTTAAAATGTGTGTTGGTCATTTTGACTTTGTTCTTGGGGGTTTTGTGGGGTTTAGACTCTTCTCTTGCCTGAACATCTGCTACAGACACTGTGACACTCACAATGGGGCAGACCAGTTGCTTTAATTCAGCATTACAGCCAATTTTATCAGCTTCCCTTTTACTCAATAAGCTTTTAATACcatttgtttctctgtcttCTACTAGAATATTTTTCTCTAACTCAGGAATGAGATCTCCTTTTGGAGGGTTGTCCAGACACACAGACTCCCCAGAACTAGCTTCTTCTCCATCtttcttgcttattttttccagattaTCCTGTGATGTAGGAACTGTGTCCATTACTTTGCCACCACTTATTGTTTGAGAAGGCTTGGAAGACATGACCTGTTTTAAGTCTGTTTTATTTGCCTCAATTAATACCTCACCGACTCCTTCTACAACATAATTTGAGCCAACAAAGTTGATGTTTTGCCCATTTGTGTCAATGGGCTCTGGGTCTGGAGCGGGATCTGTAGGCCTGTGATCGGTGTCCCTATTGCTGCATGCTAAGAACAAATGCTCTACAGGACACTCAATATTGTCACCAGAACATACAGCAGATGGGTTTTCCTTAGGATGTCCAGATTGTTCTTGCACTGCCTCAGCAGGGTTTCTCTCCTCATCCATGTCAAAAGAGCCCTGACTGCTCAGACAGCTGGAGCTGCTGTCCTCACTGCCAGTCCTGGCTGTGCTAGATCCCTCAGAGCCTTTTCTTGACAGTCTTTCTCTTCTTACTTTGGACACCTTTGGGGAGAGTGGCACTAAAGCCTTAGGTCTGAAAGGCAAATGAAACTTGAGTTCGGGAattcctttctctcttcctttacTCAAAGGGGCGAGGAGCTTTTGATTCAGTACAGGTTTCGCTTTCAGAGTGGGTAAGGATAccttaaaaggaaaaattaGAGCAGTTAAAAATGGTCTACAGGCAATACTGCATAAACCAAAATTTAGCTCTTATCAGTCATTGCATATCTTTACTTTATATTTGCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU158965 True 2336 lncRNA 0.45 1 6203698 6206033

Neighbor

gene id symbol gene type direction distance location
AMCG00000869 NA coding upstream 5175 6194058 ~ 6198523 (+)
AMCG00000872 NA coding upstream 9907 6189970 ~ 6193791 (+)
AMCG00000867 acmsd,LOC107555338,LOC107723660 coding upstream 14636 6181905 ~ 6189062 (+)
AMCG00000868 mgat5,LOC103369129,LOC106575089 coding upstream 83417 6083991 ~ 6120281 (+)
AMCG00000862 LOC107551943,LOC108430494,LOC107663912,LOC107733654 coding upstream 254394 5939611 ~ 5949304 (+)
AMCG00000871 NA coding downstream 12347 6218380 ~ 6221405 (+)
AMCG00000870 rab3gap1,LOC106586310 coding downstream 26496 6232529 ~ 6252770 (+)
AMCG00000878 NA coding downstream 98984 6305017 ~ 6332100 (+)
AMCG00000877 NA coding downstream 128715 6334748 ~ 6340034 (+)
AMCG00000879 NA coding downstream 151061 6357094 ~ 6361025 (+)
G126781 map3k19,LOC106586307 non-coding upstream 2093 6200909 ~ 6201605 (+)
G126714 NA non-coding upstream 404063 5719268 ~ 5799635 (+)
G126697 NA non-coding upstream 631766 5569970 ~ 5571932 (+)
G126667 NA non-coding upstream 736170 5466982 ~ 5467528 (+)
G126621 NA non-coding upstream 853456 5349982 ~ 5350242 (+)
G126805 NA non-coding downstream 7149 6213182 ~ 6213407 (+)
G126886 NA non-coding downstream 174941 6380974 ~ 6381195 (+)
G126919 epc2,LOC106586324 non-coding downstream 467579 6673612 ~ 6674227 (+)
G126898 NA non-coding downstream 479396 6685429 ~ 6748609 (+)
G126982 NA non-coding downstream 1025320 7231353 ~ 7254142 (+)
AMCG00000848 NA other upstream 737717 5461301 ~ 5465981 (+)
AMCG00000734 NA other upstream 4389541 1805407 ~ 1814157 (+)
AMCG00000729 satb2,LOC107690605,LOC107569722 other upstream 4505125 1668845 ~ 1698573 (+)
AMCG00000723 crygs,LOC107756035,LOC107663530,LOC105911960,LOC103033891 other upstream 4597667 1599696 ~ 1606031 (+)
G125561 NA other upstream 5800107 339640 ~ 403591 (+)
G127134 NA other downstream 2411166 8617199 ~ 8620195 (+)
AMCG00000949 NA other downstream 3894250 10100283 ~ 10154187 (+)
AMCG00001002 myo3b other downstream 5793631 11999664 ~ 12011425 (+)
AMCG00001022 NA other downstream 6082917 12288950 ~ 12385042 (+)
AMCG00001098 NA other downstream 8944242 15150275 ~ 15184392 (+)

Expression


Co-expression Network