G126898


Basic Information

Item Value
gene id G126898
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 6685429 ~ 6748609 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU159121
GACAGGTATAGAGCAGTCACTATACTTTATTTTAGGGGGGGATAGCATACAATTTATCTGTACAATATTTATCAATCACTTCCAACCAGGCCTCTGAAATAGTTTGTTAAATacttgcaaaaaataaaaatggcaagtACACTTTTACAGTAGTACAGTCATTTGTGCCCAAGACGCATAGAACATCGGCAGAGACGGAGAATAAAGctaacatattttaacatattagCTTTCTGGCATATCGAGAGGTAATGTGTGTCACATGAACTGAAACCGCTTTATAGAAAACACTGCTGGTCAGAGCTCTGAGGTAAACAATGTTAAGATTAAGGGTGTCATTTGTAGTGTTTGTTGTCATACcggttaaaataaaacataatggaaaAGAAATGAAGACATTATTTGGGcctaaacataaattaatacaatattaaaagaacaacaacaataataaactctTATTTTGGAATAGATTACTTTAAAAAGGACTTTTTGCTTTGTGAGATcgttcaaaaaaacaaaacaaataaaaaacatgctaATTCACATtctaaaaaacaacattcatatttacataATGTGCATTTTACTAAAAACTCTGCTGCCAATGTGTGGTTAGGTTTTGGCTTCTTGATCTGAAAAACTGAACTGGTGCCGCCGTAGAAATGcaaagggagaaaaagaaatgaaaatcgTGCTGCTTGTAAAAACAGGACCGAGAACCTTTGTACAGCGTCAGACAGTCCAGCTCTCAGTCCCGGTATATTCAAGATGTCTTTGTGAGAGAATGGGAGACAAATGACACCCGAAAGTACCGTCAACCCAGTAGGTCGAGTCACATGGCTACATTGATTTTCTTTAGCGCAAGGACAAAAACAGTGAACGATACAATGGCAGGTGTTATATATAGGCAATTGCATATATGCCTTCCGCCCCTCCCTGCTTGGAGACCGGTGACCTATTTTATCGACACATTTGCTCACAGACTGCTGTAGTACGTACACATCTGCTCACCGTTTTAGTGTAATAAAGCTTAGACAGCTGCAAAGTTCCAGTGTGCAGAAATATTCACTGTACAGCACTGAGAATATTCCTCGAAACCAAGCAAGAATCCCCGATCGCTTTCTGTTTAACGAATACTGTTTGAACTGAGGAGACGGACCCATTTGTAATATGCCGAAGCGGCGTCTGTGTTTTCTTTGCACACAGACGAGCCCTTCGGTCCGCCCGTCTCTGGCTCTTGTCAGAAAGGTAAGGGGATATTAGTGTCCGCACCCTACAATTGGCACCTGCTCCTATCCTTAATTCTCCGGCATGGCGATTTATTGTCTAGAGAGAAATCAAACAGCACTTATTGacaagtttattgtttaaaaatgctacAATTGTGTAAAGGTTTGCCATTGGCAGAATGTTGCTATACCTGCACTGATTGCATATCATGAACTTAGTAAAGCATAGTGTTGTATCCCTGAAcgtcttgtttttaaaaaaagcaatattgaACACCtgtctgtgaaataaaaatacactttaaatacaaaattagaattggattttcttttttctttttctttttttcccatcAAAATCCAGAATATGGTAAATTGTAAGTGCTCAAAAGTTATTTTGGATATATTTCTGTATCATTTACATAAGTTACTTGAAACCCTGACTTCAAATTACACGTTTGATTCATTAATACTCTGCAATCCATTGCATACGATTTACTCCGTtgatgaatacaaaaaacatgtctttgtttGTGGCTTGTATCCTGTCTAGCGGGGTATAATTAACACCACAGATGTTGAATATTTACCGTAAATAATGGCACCAAAATGAGTGTCACACAAGTCACTTGCGGCTCAAAGCAGAGAGAGGGGTTTGAGAAACAAAGCTTCCTGAGGTGTAATTTAATACAGTGATACCAGCAGACCTCTAAGTGTATATCCATCAACAGGTGCGGGAAAAGCAACACATCAACAGTtagagaaaggaaaaacagctcgtaaaaacaaaaaaaaggtacaGTTCGCAATACCAGTGTCACAGCTCACGAGGggccaaaaacaaagaaagaaaaaaaaaaaaaggcatgcGTATATCATTAAATATTCCATAGACACAGCAAACCTAAATAGGGAAGtgctttcaaatatttgtaGTAAGTTACATTtcggggattttttttttcttttttcttttttaagaaataaagcttttctaaacaaaacgaataattaaaacacttaaaaacagcagggcaaAAGAATACACAAAGCTAAAACAAGAAAGAAGGCAGAAACACTTATGAATGGCCATTTTTCTGTTggcatattaaattaaatgatgcattttgttttttcttttaaaatgcataaataccaAAAAAAGATGTCATCTGATATTTAGAttgttttagtgtttaaaaaaaaaaattgtcagaTGTGGAACTGAGGTATACCTTGTTGAGGGAGGTTTATGGTTATTTAAAGTAATGCTTGGAAGCGAATCCCACCAAATAACCTTGATTACCATTTTTGTTGATATACGCACAGCAGCAGTACACTAAACATTCACAAGCTGTTTCATATTGGCATTACAATAGTCATTTatagaaacacaaaacagcaaatgcattaaaaacaagttGCCCTTTTTatactgaaatgaaatgaactgtgttgggtttttttgtatagtcttttttttctcttcttttcttaaaaaactAGCAGTCCATTAgaggaaggtttttttttgtttttttttcgtCTTTACTCagatacaaaagaaaaatacctgCCAAAAgttgatttaaattacaatgtcttTTGCCAAGCAGATGATGAAATGTTCTACCTTTTCCCCTCCTTTGAAGGATCCTGATTTTGattagtttgtttctttgtttgtctcCTGGCTTACAAGAGCCAGATGCAAGTCTTCAGGCacacaaatgtaacaaaatgtcGGTGGTAGAAAACAGTCTGGTATCTGTAATTCCTGATTTTCTTCAGTCTGCGTTGGCTGCTGTACTGATCTGTACACAAGAACACAATATTGAGTCTTAATGGTAACCAGTTGAGTTATTTTAGCAGCTCTGGAGTCGAGTCCGATTggtcattgtgtttgtgtttcatttcgTCGTTGTCGTTCTTGTACGTCTCGTTCCGAGTGACGCGGCCATCATAGGCTGGACTCTTTCGGTGGGAAGTCTACGTTGGTCACCATTGTGACCACAGTAACGATCTCCTCTGCTGTGATGATGTTCGTCAGTCTCTGCATTTGAATGATCCGCTCCTCGACGCAGCCGGCCGACAGCCTGGCCTCGGCTTCGTGATCCCAGCACTCCTCGATCGTCTCACACAGCATCGCCAGGCCCTGCAGGGGGAAACGCGCACACATGACTGATGATGACACGGCTGAATTACCCACCGCAGCGAGAGACATAAGAGGCATGAGATCATAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU159121 True 3475 lncRNA 0.38 2 6685429 6748609

Neighbor

gene id symbol gene type direction distance location
AMCG00000882 NA coding upstream 143818 6532001 ~ 6541611 (+)
AMCG00000881 rnd3,LOC108425727 coding upstream 258491 6418882 ~ 6426938 (+)
AMCG00000876 NA coding upstream 320159 6362207 ~ 6365270 (+)
AMCG00000879 NA coding upstream 324404 6357094 ~ 6361025 (+)
AMCG00000877 NA coding upstream 345395 6334748 ~ 6340034 (+)
AMCG00000890 NA coding downstream 539674 7288283 ~ 7307656 (+)
AMCG00000891 NA coding downstream 595261 7343870 ~ 7346591 (+)
AMCG00000892 NA coding downstream 1079063 7827672 ~ 7841512 (+)
AMCG00000893 NA coding downstream 1111457 7860066 ~ 7942406 (+)
AMCG00000895 NA coding downstream 1209240 7957849 ~ 7976053 (+)
G126919 epc2,LOC106586324 non-coding upstream 11202 6673612 ~ 6674227 (+)
G126886 NA non-coding upstream 304234 6380974 ~ 6381195 (+)
G126805 NA non-coding upstream 472022 6213182 ~ 6213407 (+)
G126782 NA non-coding upstream 479396 6203698 ~ 6206033 (+)
G126781 map3k19,LOC106586307 non-coding upstream 483824 6200909 ~ 6201605 (+)
G126982 NA non-coding downstream 482744 7231353 ~ 7254142 (+)
G127033 NA non-coding downstream 861008 7609617 ~ 7613856 (+)
G127038 LOC100136012 non-coding downstream 881293 7629902 ~ 7645720 (+)
G127091 NA non-coding downstream 1540180 8288789 ~ 8289806 (+)
G127096 NA non-coding downstream 1545909 8294518 ~ 8294873 (+)
AMCG00000848 NA other upstream 1219448 5461301 ~ 5465981 (+)
AMCG00000734 NA other upstream 4871272 1805407 ~ 1814157 (+)
AMCG00000729 satb2,LOC107690605,LOC107569722 other upstream 4986856 1668845 ~ 1698573 (+)
AMCG00000723 crygs,LOC107756035,LOC107663530,LOC105911960,LOC103033891 other upstream 5079398 1599696 ~ 1606031 (+)
G125561 NA other upstream 6281838 339640 ~ 403591 (+)
G127134 NA other downstream 1868590 8617199 ~ 8620195 (+)
AMCG00000949 NA other downstream 3351674 10100283 ~ 10154187 (+)
AMCG00001002 myo3b other downstream 5251055 11999664 ~ 12011425 (+)
AMCG00001022 NA other downstream 5540341 12288950 ~ 12385042 (+)
AMCG00001098 NA other downstream 8401666 15150275 ~ 15184392 (+)

Expression


Co-expression Network