G127144


Basic Information

Item Value
gene id G127144
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 8638596 ~ 8639823 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU159408
gaacatttaaaaatagactggataggatgcttggatcacttagttattaatggataccaaacaagcacgatgggtcgaatgcctcctctcgtttgtaaactttcttatgtttcttaagttTTAAGTGATTCCTGTGGAATGGTATTTATCTTTCATGAGCAAGAAAACTCCACATTAACtttaaatgacacaaaaaataagGGTACATGGATATTATGAGTTGACATTTTCTGCATGCTGTGATCTGTGGAGCTGAGAACATGgaactgatttaattaaacaaacggGATACACAATACACCGTGAGATTGAGTAGCtgctaatgtttttaaatacagagcaaAGTTATTTAGTATGTGAAGTATATTACAAATGaagaaattattttgtatagattGTTGTCATGCTTTTAAGTGTTAAAAAGTGATTAATGTATACTACTTTATGAAACCGATATATTCCTAAAGTTACTTAGACTGTAGGGTCAGTTTAAaattctgtaaaatacaaatattttgttatactggAAACACTGGGTTTGCAAAGTTAACAAACTACtgataatatattaatgttaatcCTGGCTTAAGTATGGTTCTCCCTAGTTTAAACGCAGAAAAGTGAAGTGTGCGTGTGATAATTGAacctgggcagcagtgtggagtagtggttagggctctggactcctgcattgagggtcatgggttcaaatgtatgtatttcactGTAGGTAAAACAATAATGTGACATACTGGAACAATTGTAAGTGATCtctggataaggttgtctgctaaGACATACATTAACTGTGTTCACAACTGCAAGGTTCAAGGGTAccctacatttaaaaataaagattgatcCAGTAGATTTTGATAAGCTCAAAACTCAACTCAAAAGCACTTCTCTTCATCTGACCTCAAAGTATTTCAGTATTCAGTGAAGATCAGATTTTGTGTGTGGTGAATGTTTGTGAGAGACTACCAAAACacattaacttaatttaatcCTACATTTGACTGaatagaataatgtatttaaatacttttaacatGGCATACAGAAAGACATATATGCTGTCTAAGTATGATTATTAAATATCTCTGTTTATCCCCTAAACTATTTTACATGGTACTTCTTGAGCTACCAATAGAGTTATAGAGTGACATTTTGGGTGCCAGAGACAACAttcctttgtatttttttgtacatttgtttgaaCTTTAAA

Function

GO:

id name namespace
GO:0060034 notochord cell differentiation biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU159408 True 1228 lncRNA 0.33 1 8638596 8639823

Neighbor

gene id symbol gene type direction distance location
AMCG00000905 NA coding upstream 2716 8628581 ~ 8635880 (+)
AMCG00000904 mcm6,LOC107748580,LOC107705596,LOC107688862 coding upstream 22062 8609600 ~ 8616534 (+)
AMCG00000903 dars,LOC107676220 coding upstream 29963 8590668 ~ 8608633 (+)
AMCG00000907 NA coding upstream 63286 8574840 ~ 8575310 (+)
AMCG00000908 si:ch211-246m6.4,LOC107565497,LOC107656681,LOC107600970,LOC107751464,LOC107739350,LOC107653571,LOC107600989,LOC102786361 coding upstream 454571 8182377 ~ 8184025 (+)
AMCG00000910 NA coding downstream 1851 8641674 ~ 8645197 (+)
AMCG00000913 gmppaa,LOC105902665,LOC107556449,LOC108266472 coding downstream 6830 8646653 ~ 8652047 (+)
AMCG00000911 asic4 coding downstream 158763 8798586 ~ 8799621 (+)
AMCG00000912 LOC106586149 coding downstream 230141 8869964 ~ 8880928 (+)
AMCG00000919 wnt6,LOC107672249,LOC107560470,LOC107663826,LOC107562106 coding downstream 278929 8918752 ~ 8929267 (+)
G127096 NA non-coding upstream 343723 8294518 ~ 8294873 (+)
G127091 NA non-coding upstream 348790 8288789 ~ 8289806 (+)
G127038 LOC100136012 non-coding upstream 992876 7629902 ~ 7645720 (+)
G127033 NA non-coding upstream 1024740 7609617 ~ 7613856 (+)
G126982 NA non-coding upstream 1384454 7231353 ~ 7254142 (+)
G127206 NA non-coding downstream 441504 9081327 ~ 9082881 (+)
G127278 NA non-coding downstream 723284 9363107 ~ 9377589 (+)
G127509 NA non-coding downstream 1803170 10442993 ~ 10444937 (+)
G127774 atp5b,LOC107682211,LOC103355037,LOC102782720,LOC100705231,LOC102302090 non-coding downstream 3031945 11671768 ~ 11742750 (+)
G127924 NA non-coding downstream 3454318 12094141 ~ 12096863 (+)
G127134 NA other upstream 18401 8617199 ~ 8620195 (+)
AMCG00000848 NA other upstream 3172615 5461301 ~ 5465981 (+)
AMCG00000734 NA other upstream 6824439 1805407 ~ 1814157 (+)
AMCG00000729 satb2,LOC107690605,LOC107569722 other upstream 6940023 1668845 ~ 1698573 (+)
AMCG00000723 crygs,LOC107756035,LOC107663530,LOC105911960,LOC103033891 other upstream 7032565 1599696 ~ 1606031 (+)
AMCG00000949 NA other downstream 1460460 10100283 ~ 10154187 (+)
AMCG00001002 myo3b other downstream 3359841 11999664 ~ 12011425 (+)
AMCG00001022 NA other downstream 3649127 12288950 ~ 12385042 (+)
AMCG00001098 NA other downstream 6510452 15150275 ~ 15184392 (+)
G128823 NA other downstream 6769289 15409112 ~ 15420880 (+)

Expression


Co-expression Network