G127300


Basic Information

Item Value
gene id G127300
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 9455971 ~ 9468876 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU159616
tctgcaaatacagtattattgaaatacacactataccaggggtgtcagactccagtcctggggggccgcagtgtctgctgggtttcattccagcccagctcttggctccttaattggtctaattaaacaattaactggattaatttaacCCTTCTCTTCAGACTCTTGAATGTTCTGagggttcaatgttttgagtcacCAATAAATAAGGGATTGgctttaacattaaaatgtgagttttagataagcctgcctgagtaaataatgacatgaattaagtaattgggatctcctgttggaacaagAACCACCAGACACTGTGCCTCctcccccaggactggagtctgacacccctgcacTATACAGtcttattataaaaataattctcAAAATGTCTGgaatatgaataatgaaatgtaaagaatacatttaaaacaaaggtgCAATAAATAAGAACAGGTCACCAAATTTGTagtctgtgttttaatgttgcctttcattgaataaaaatacCCACCAGGTATTTCCCATAGTTTAGAGCTAAAGATATACAGGAAAACTGGTCAATTATTTTTCAGCATCCATTCATCAGTTGTTTGATGTTGaagaaatacagaagaaaaccCCTTACAACTGAATTTTCCTtagtgaacaaaaaaaaacatcagtgggAACTTCAATTGTCAGTAAGAGGAAATACTCTTCCATTAACAGCAAACATTTATGTTCTTTGTATGTGATGGTTTGAGATGACCAATTATTTTAGCAAAAATAGCTTAAGTCTTCATGACCATGAAGAGGACTGGGgttattttttgctttcttaaGCACAGCTGGAAATACAAAGTAATACCATacaaacactaaaaaaaaatgtaaattaactaTTAATTGGAACATGCAATCGGCAAACTTTATAGGATAGTGTGCttaaaatataaacctgaaTAGCCAAACATGTACAACTTGCCCACTTTgtaaaaaacaagcaaagaatTCCAAGTTAGTATTTTCAGAACCTGTTGTAATCCAGGAGATAAAGTGAAAATATACAGtgacaaataaattactttatCCTAATATGATAATCAATGAAGGCACATGTAGTATGTTATGGTGTGTCATAAAGTTTTTAAGTTTCAGTGTTTGTGGGCAAGTGTTTATTCtcccaaatacaaatatatacaagtgAAAAATagtgcattcatttaattagaCCCACAGcttaaaatgacagtttttccCTCTAATTCAGTGAAATGTTACTTATGTATATTCATAGGTCTATCCTGGTTAAACACTCAAGACAAACCaaagtttgacattttgtttaatagaaAAATCAATCTGTGCCCTTCAAGGTTATAGAAACGTTAAGCATTTGTTAGGCCAGTTGGACAAAAATGCTATtccaatacatacaaaatgtactgcaattataaatacagtattaataatcCTGAGCGTATACTATAATGTCTTAAGGTATAAGATGTGTATCTAacgtataaaaaaaaaatctatttaaaaagtcCATGATCTTAACTGTTGGAAGTTAATGAGAGTAAAGTAGACTtaggaacaaaatgaaaattagtTTTCAAAAAAATCCTGTTACATTTCAGAACAGCTTTTCCTGGAGAATGGATTCATATCAAACACCAGACCACCGTCAGTGCTGCCATAATCCCATTCAGTATCGCCATGCTGTAGCCCATGTGAAAAGAATGACCTGTTAATttCTGAAGCGTGCCGGAGAAAGGGGGGTTGGAGGAAACATTCCAGGTTCAAAAGAATCAAAGTATGTCAGGGTCCATGAGAAACTACAACACGAGATGCCAGCAATCACAGACAAAATCAGCAAGCTCCAGAACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU159616 True 1875 lncRNA 0.35 2 9455971 9468876

Neighbor

gene id symbol gene type direction distance location
AMCG00000932 prpf40a coding downstream 2205 9432288 ~ 9453766 (-)
AMCG00000931 NA coding downstream 168495 9284104 ~ 9287476 (-)
AMCG00000925 kalrn,LOC106581831,LOC106586158 coding downstream 259408 9137815 ~ 9196563 (-)
AMCG00000926 NA coding downstream 347601 9083724 ~ 9108370 (-)
AMCG00000920 NA coding downstream 379707 9072458 ~ 9076264 (-)
AMCG00000933 rprm coding upstream 38609 9507485 ~ 9513855 (-)
AMCG00000937 nr4a2,LOC106586168 coding upstream 347335 9816211 ~ 9822857 (-)
AMCG00000940 NA coding upstream 476695 9945571 ~ 9949996 (-)
AMCG00000942 NA coding upstream 486369 9955245 ~ 9960709 (-)
AMCG00000941 acvr1c,LOC106586171 coding upstream 499271 9968147 ~ 9974765 (-)
G127291 NA non-coding downstream 47502 9408193 ~ 9408469 (-)
G127275 NA non-coding downstream 95375 9358348 ~ 9360596 (-)
G127229 NA non-coding downstream 372385 9066840 ~ 9083586 (-)
G127159 NA non-coding downstream 691579 8764113 ~ 8764392 (-)
G127145 NA non-coding downstream 816088 8638596 ~ 8639883 (-)
G127325 NA non-coding upstream 81774 9550650 ~ 9557148 (-)
G127337 LOC107575789 non-coding upstream 185454 9654330 ~ 9654643 (-)
G127346 NA non-coding upstream 355920 9824796 ~ 9830690 (-)
G127420 NA non-coding upstream 678899 10147775 ~ 10150934 (-)
G127478 NA non-coding upstream 922428 10391304 ~ 10395926 (-)
G127292 NA other downstream 36646 9418996 ~ 9419325 (-)
G127039 LOC100136012,LOC107575789 other downstream 1810249 7629915 ~ 7645722 (-)
AMCG00000888 LOC102209482 other downstream 2722154 6689568 ~ 6733817 (-)
G126700 NA other downstream 3882944 5572705 ~ 5573027 (-)
AMCG00000838 cacnb4,LOC108434427 other downstream 4473320 4957138 ~ 4982651 (-)
G127443 NA other upstream 805811 10274687 ~ 10278211 (-)
AMCG00000960 NA other upstream 1227980 10696856 ~ 10700364 (-)
AMCG00001041 cir1,si:ch73-167c12.2 other upstream 3228301 12697177 ~ 12703910 (-)
AMCG00001039 NA other upstream 3256818 12725694 ~ 12732601 (-)
G128160 wipf1 other upstream 3263308 12732184 ~ 12751516 (-)

Expression


Co-expression Network