G127325


Basic Information

Item Value
gene id G127325
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 9550650 ~ 9557148 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU159645
acacattagagGGCAATTGGCAGACAGCTGTTCCGATTAATTTCCCTTTAAGGTTTTCTCTGACCTGTCACTACACATATCAGTTGAAAACGGTTTCACAGTTAACTCACACAATAGGTTCTAAtctattgtgtgtatattttcctGATTGCTGTCCATAAAACACTTATGTAAAATTAACTGGAATAGCTGGACTCCTGTCAGCCCTAACATATTACACAGCATGTACACTGTTTACTATTAATGATTCAGTAAAGTATAAAATTCTATAGACATAACatgtaaataatatgtaaatatcatTAGCATTTTTACAGGGCCTATATccttaatatttattaaaaaaatattttgttttgtatttacagCGATTTTCAGAATCTGAtcagaaatatttacattgtgtatgtgtttttgtgacAATAATGCATCaatgaaatatttaagaaatgtagtGAATGTAGCTTATTCTATTGAGTGTTAACAGGTAACAGTGAGTCACTGGTGTCATCAGGAGCTCTACTTCTAAAaccaatgtattaaatatgtattcaacTGTACTGTAACATACCTTTTCTTAGCCATGCTGGATAATCCCCTATATTTCATAGCAACAGTTCCTCATCATTCATCAGCCTCTGAATTTGAGAGGTAAATGTGAGGTTGAAAATTGGAACAACTGTGGTCTTAAATATTGAAACTGGATTTCAaatatgtagtttattttctaaatatatatatacgtttacAATTTCCTAATCTGAACTGAGAATGTGTAACACCAATTTAGCACTGTAAAATGGGACTGCCCTAGAATAACTTTAAATACATCGAGGATGTAGGTGTCCGATTGATTGCTTCCTTTCACACTGAACTTCCAAACTTTAAACAGCAGAACTAAGGATGCAGCTCCCACTATTACAAAATGATTACACTTTCAATTATATATccatattgttattgtaatttatatataaccTGCTTTCTATAATCAGGGATTTACATTATGtataaaggtgttttttttgcaaatgtacagtatataaatgtCTTTTATATGATCGATTTgtttaatgataaaaatattTCAGGTATACTAAATTatgattgaagagaaaaaatactttatgggaaaaaaaatatttggtgtTATTTAAGATTTGTTCgacattttaaatagctttCTGTGACATTCATTAATAACTTCAAGAGTACaagaaagttaaaataaattgaaatgaaagacTGCAATCCCTGACTTTAAAAAAGAGTATGAACATTGCCATAGAAAGTACATACATATAACAAGACTTTTACATAAGCCCCCAAATTATACATACCAAGCATATTTAGAGAACAAATTCTAGACATATGTATCCCTCTCCCCTTAGAAAATTACTTTAGAATTTTAACTGATTGTTTTACACTTCAAGTGTTgtgtattttcacaataaattTGGTCCCttctttttataaatacagcaataattGATATGCATGGCTCTAATGTACTACATTATTAAATTTGATATTAATTTTGTAAGAGGAATACCAGCCAAATTGCTTTTACCctttctataaaatattaattattaagaaTTTGTGGGAATATATAATAGGTTTAATTTTTGCTTAATCAAaagttctgacaatgggagatgttccactaaggaaagaaaaccaaaggaagctactagtaggaaagtcctgaaatgtttgtacctcaatgccaggagtataaggaacaagattttagacctagaagccacagtgctggtgggtgactatgatgttgtaggagtgacggaaacatggcttacagaaaatgatggggatgaatacaagttgaaaggatacacagtttaggagggacaggcaaaatcaaagaggtggtggggtagcattatgtGTCACAAATGACATTGAAGCAGAAGAATTAAAATTAGATcgtagtaatgaaacagaatcttaaTGGGTTAAATCTTTGACttaaagatctggaggattagtggaaggaccacccaactcagatatttaacaagatgttgcactgtacagtgtaatcaggactgcatgtagcaaggatgtgccTGGGAatgcccagttgggactacagaagcagaaatagaaatggccGAGAtagtaaatgactgctttttaactcagtttgtcagggaaccaaccagagagagcgcatgcattgacttgatattttcaaatgacccaagatagagtcagagggacactagttaaccaatggcaaactgtgatcacaatatggttagctttgaggcatacttgcaaaaaacaaggcccaagtctaaaacaatggtcttcaattttagaaaagcaaaccttgaagttatgaggtggcacttaggaGAGTTAGACttgagcacactggatacagattaagttgaaaatggatattatattttaagaatatactacctgaggctcaggagaaatttgtaccaaaaaacactggccaaaatggtttaatagaagtatggaaaaaatatcaagagaaagaaaatgttgtatagtgcatacaaaagggatagagatgaaacaaaatagaaagaatatgttgaactgcaaagagatcttaagaaagggatcaggaaagcaaggatggaaatagaaagaaacatagctctttgagctaaaactaataccaagagcttttttcaatactacaacagcaagaggtcaataaaggagcaagtgaaacagataaagggcaaaaatggaagtatcttggaaaacgaacaaggtttggcaaatgttctaaaggAGTATTTCActcttagaacaggggatgtgccaactgactggaagacagcaaatgtcaaaccaatccacaagaaaggggacaaaactgagccaggaaattacagaccaatcagtctcacctgcatcacctgtgaaatgttggagaaaatgattagacagaaaatagaggagcatcttaatgaaaaccatattcttggagatagtcaacatgggtttagatgaggcagatcatgtcttattaATCTATTAgtgttttttgaacatgcaactgcagctgtagatcatgtgaaagcatatgatatgatatacttagatttccaaaaagcttttgataaggttccacaccaaagactgatcctcaaattggaagctgtaggcattcagggtaatgtaagtagatggattatgaactggttgatgtctaggaaacagagggtgtcgattagaggagtctcttctaactggagtgaggttgttagtggagttccacagggatcagtactagggcctttgctttttctaatctatattaatgatctggactctggtaTAGTTATATAGGTTTAGGTTTTTCAAAGGGAATTTAGATAATATTCatttgtgggccaacacctggcagatgaaattcaatgtggacaagtgcaaggtagtacatgcaggtaacaaaaatgtccactattattacactatgggaggaatagaattagatgaagtaatgcatgagaaagacctaggagtctacgtggactcctaaCTACACTGGTTTTAATCTCCCAAATCAactgaataaaaacagatttgtatttaaacctTTTCAATTCAAGATTATTGAAAGGAATTAAGTTGCTCTGGGGCGGAGAAGGGCAAAATGCAGATCAAAATCttgaatacataatataataaagcaatacaatttCCCTTATTTTATCCTACTTGTTATGCATCTTGACACATTCAATGACCATTTCAGAATAGTGCAGATCAAAGAATTCTGTCTgactatattttttaaatgcttttctctacattagcaaacaaacaaacaaatgacagtAAGCACAACCATGGAACTGGaatgataataaatgaatacactaGGATTAAAAttaccgtaaaacttccaatactcgctgggtctcaaatagcagccggtctccaatagtcgctgggttgatttgcataatcatgtaaacaaaagccggtcTCTAATAAACGCCAGGTTAGGCGTTACAAAACAgacttgacaatgttttataaataaagaaaagggaaatcgatacagtttctaaagatgcattaacacatttgaaagaaccttccacaacatatCCACAACCACAacctttcttgttttcagtaaatatatatactgtatattaattaaaaaaaacaccatcacgtgtgtttttattatatatagctgtatatttgtattgctgttaattgcagtgattgaactaactgtCAATTGCGACAAACAAAGTATAATGTTGATTGTTTGGTTTAAAACGTagttccacagttttgttgaagtgctttgtgtttatttaacgAGAGTTAACAGTATATtgaatcttagactgctaacagaattaccgaTATCTTATTTTCAATCCActgtatagttcaccatacacTGAATGTgatttgcatctttggaaagcaaattaataataaataataatacatacaaaaataaaagcctggcctatttgcctacttctacaatgaagcaatgtttgcAGGCTCTTCTTAACCTGCACGAGTCCATGATGTCTATTTATtcatgaatgtttaatacaaacgccAGTCTCTTACGATTGCTGGTCTCCAATTAATGctggggcttcttgcagttatttggaatataCACCGGGggcgtttaattgaagttttacggtaaTTAGAGTTGCCAAATCACACATGTAACGGTGTATCTAGTggtaaaatgtcaaacattttATTAGGACCTCCCCTCGGACAAGATTAAATATCACCAAAAATCATTACAGCACATGGCCTTATAAAATACCCTGAGTCATATGATTAAGTCCCCCCCAATAAAGATATGCTTATATGCCACTGATCATAACTGCTGTTAAGGAAGAAATCCTCCTTCACTATGCCATATCTGAGAGTGAACAGCTTCAGAAACATGGCAAAGACTTCACATATTTTCAGTGGCACCTGAATTCCCCAGAATTCGCTCTATTTTCTGAAATATGCTGAATCTGAAAAATGTAGTCTTCTGCTGTGTTCTCTGTATAATGTGCACAAAACATTAATGACAGAATGTGTTATGATCTCCTGTGAAGCAAGACAGTCCCTTGAGGAAACAATGTTGCACTGTGTCAAAGACGTGGAGCAGGAAAATTCTGGCCCAAGTCCACACTTGTCCAGATAGTAATAATGGGACTAGGCAGCATAACTGACATTGCCTCTGACAAGTAAAATCAACTGGCGACGAAGTGGTAGGTACCCTGTAGACACTGCCAGTGAGAGTCGTCTCTTCGTGGGCTTCAGGCACTCAAGGTCATGTTTCTCAGCAGCCACTGCTGGGATCGGCTGCCGCTGCAGTCCCTCAGGGTGGGAACCATTTTGTCCTCCTCAGAAGGCATATCGAGACACTGGTTACTGTTGACGTGCTGAAGTGTCAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU159645 True 5453 lncRNA 0.35 2 9550650 9557148

Neighbor

gene id symbol gene type direction distance location
AMCG00000933 rprm coding downstream 36795 9507485 ~ 9513855 (-)
AMCG00000932 prpf40a coding downstream 96884 9432288 ~ 9453766 (-)
AMCG00000931 NA coding downstream 263174 9284104 ~ 9287476 (-)
AMCG00000925 kalrn,LOC106581831,LOC106586158 coding downstream 354087 9137815 ~ 9196563 (-)
AMCG00000926 NA coding downstream 442280 9083724 ~ 9108370 (-)
AMCG00000937 nr4a2,LOC106586168 coding upstream 259063 9816211 ~ 9822857 (-)
AMCG00000940 NA coding upstream 388423 9945571 ~ 9949996 (-)
AMCG00000942 NA coding upstream 398097 9955245 ~ 9960709 (-)
AMCG00000941 acvr1c,LOC106586171 coding upstream 410999 9968147 ~ 9974765 (-)
AMCG00000945 NA coding upstream 429985 9987133 ~ 9988508 (-)
G127300 NA non-coding downstream 81774 9455971 ~ 9468876 (-)
G127291 NA non-coding downstream 142181 9408193 ~ 9408469 (-)
G127275 NA non-coding downstream 190054 9358348 ~ 9360596 (-)
G127229 NA non-coding downstream 467064 9066840 ~ 9083586 (-)
G127159 NA non-coding downstream 786258 8764113 ~ 8764392 (-)
G127337 LOC107575789 non-coding upstream 97182 9654330 ~ 9654643 (-)
G127346 NA non-coding upstream 267648 9824796 ~ 9830690 (-)
G127420 NA non-coding upstream 590627 10147775 ~ 10150934 (-)
G127478 NA non-coding upstream 834156 10391304 ~ 10395926 (-)
G127555 NA non-coding upstream 1007779 10564927 ~ 10566649 (-)
G127292 NA other downstream 131325 9418996 ~ 9419325 (-)
G127039 LOC100136012,LOC107575789 other downstream 1904928 7629915 ~ 7645722 (-)
AMCG00000888 LOC102209482 other downstream 2816833 6689568 ~ 6733817 (-)
G126700 NA other downstream 3977623 5572705 ~ 5573027 (-)
AMCG00000838 cacnb4,LOC108434427 other downstream 4567999 4957138 ~ 4982651 (-)
G127443 NA other upstream 717539 10274687 ~ 10278211 (-)
AMCG00000960 NA other upstream 1139708 10696856 ~ 10700364 (-)
AMCG00001041 cir1,si:ch73-167c12.2 other upstream 3140029 12697177 ~ 12703910 (-)
AMCG00001039 NA other upstream 3168546 12725694 ~ 12732601 (-)
G128160 wipf1 other upstream 3175036 12732184 ~ 12751516 (-)

Expression


Co-expression Network