G127747


Basic Information

Item Value
gene id G127747
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 11615457 ~ 11618105 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU160162
CTTGAGTGGAGGACCTTCCTTTTCTCCCTGGCTGAGCGAGTAAAGAGAGTGTGATCATTGTTAGGAAAGATCCCAGAAGGCTGATGCAGTAATGATGAATGCAATGGCATTGGGAGGGATATACCAGGTGCACTGGAAGACATTATTAGGGTGGATGAGAGAATCTGCTGCACTGTAGCTGAGTGGGTTATTTAATCCAAAATGCAGATCAAGCACCCCCCTGTCCTCCCTGGTGTGAAGTATGGAAGCAATATACCAGATCTGTCATTTTGTTaaTTGCTGGCCCTACGTTGACCTCACATGAAGCTTGAGTATGTTTAGATCAGGGGTTTCAATCCCAGTTCCTTGAAAGCTGTAGTGTCCTGTGATGCTACAACCCTCGTTTGAGACCCCTGGTTTAGATATCAAATGAGTACTGTCCATAAAGAAGgATGTCGCTTGAGGGTTTGCTGATCGAGATCAAACAACCAGCAGGATATAATCAAACAAGGACCCAGagtttgcacattttgtttctgcattgAACTACAGACTTTTATTGACTGAAAGGATCCCAGGGAAAGGTCATGCAGTAATGTCACTTCAGGATTTCACACCAGTTATAAAATGAATTTGCACATTTCTGCATCGGCTCTTTTGTTCTGTTGCTGTAGTCATGTCAGTGCTTTGTATTTGTCTCCAGCATATTTGACTAAATGAGGTGATTCATTGCATGCAGAATTGTTTTCTATGGAATGCTTTATTACAGTATGTgtacataaatatgaatgtgcttCTTTTAATAAATATCGCTGCCACTGTCCATTGTTTTCTGACTTTGAAATGTTCTATTTTTTggc

Function

NR:

description
zinc finger homeobox protein 3

GO: NA

KEGG:

id description
ko04975 Fat digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU160162 True 839 lncRNA 0.41 5 11615457 11618105

Neighbor

gene id symbol gene type direction distance location
AMCG00000988 NA coding downstream 469 11611903 ~ 11614988 (-)
AMCG00000979 stk39,LOC106586202 coding downstream 59336 11538485 ~ 11556121 (-)
AMCG00000978 NA coding downstream 93740 11518511 ~ 11521717 (-)
AMCG00000977 csrnp3,LOC107677900 coding downstream 305444 11302327 ~ 11310013 (-)
AMCG00000971 NA coding downstream 425256 11181932 ~ 11190201 (-)
AMCG00000987 abcb11b,abcb11,LOC105911976,LOC107692229,LOC107602798,LOC108438644,LOC108270741 coding upstream 6986 11625091 ~ 11655006 (-)
AMCG00000992 lrp2 coding upstream 56981 11675086 ~ 11733640 (-)
AMCG00000991 atp5b,LOC102199207 coding upstream 123256 11741361 ~ 11746181 (-)
AMCG00000999 NA coding upstream 177294 11795399 ~ 11802453 (-)
AMCG00000998 NA coding upstream 193329 11811434 ~ 11815050 (-)
G127743 NA non-coding downstream 3845 11610243 ~ 11611612 (-)
G127742 NA non-coding downstream 5827 11609271 ~ 11609630 (-)
G127740 NA non-coding downstream 9281 11605804 ~ 11606176 (-)
G127718 NA non-coding downstream 207597 11396710 ~ 11407860 (-)
G127678 NA non-coding downstream 367513 11208541 ~ 11247944 (-)
G127899 NA non-coding upstream 290881 11908986 ~ 11911822 (-)
G127976 NA non-coding upstream 536403 12154508 ~ 12158483 (-)
G128045 NA non-coding upstream 740454 12358559 ~ 12387584 (-)
G128070 NA non-coding upstream 875073 12493178 ~ 12495215 (-)
G128155 NA non-coding upstream 1146807 12764912 ~ 12810017 (-)
AMCG00000960 NA other downstream 915093 10696856 ~ 10700364 (-)
G127443 NA other downstream 1337246 10274687 ~ 10278211 (-)
G127292 NA other downstream 2196132 9418996 ~ 9419325 (-)
G127039 LOC100136012,LOC107575789 other downstream 3969735 7629915 ~ 7645722 (-)
AMCG00000888 LOC102209482 other downstream 4881640 6689568 ~ 6733817 (-)
AMCG00001041 cir1,si:ch73-167c12.2 other upstream 1079072 12697177 ~ 12703910 (-)
AMCG00001039 NA other upstream 1107589 12725694 ~ 12732601 (-)
G128160 wipf1 other upstream 1114079 12732184 ~ 12751516 (-)
AMCG00001061 cycsb,LOC108273362,LOC108430847,LOC107740584 other upstream 1738878 13356983 ~ 13359770 (-)
AMCG00001068 LOC107576050 other upstream 2149436 13767541 ~ 13773878 (-)

Expression


Co-expression Network