G127774 (atp5b,LOC107682211,LOC103355037,LOC102782720,LOC100705231,LOC102302090)


Basic Information

Item Value
gene id G127774
gene name atp5b,LOC107682211,LOC103355037,LOC102782720,LOC100705231,LOC102302090
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 11671768 ~ 11742750 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU160196
tttttttttgttTTATGACaagacagattttatttccatCTCCATCATCATCCCcaatttaaatggaaacattaaatagaaacattttgaagatgACAAGACATCAGATACAGATTTGAATGTTACAAGTTATGAACCAAGTGCTCCTCAGAGTTGTTTTGCTCCTCTAAGCATTTACGAGTGTTCTTCAGCCAGCTTCTCAGCCTTCAGGACTACTTCCTCAATGGGGCCGACCATGTAGAAGGCCTGTTCAGGCAAGCTATCGTATTCACCTAGgGATGGCCTTAAATCCTTTGATCGTGATCTTCTGCACTCCACGGGCCACATCATAGTGCTCGTTTCCTACGATGTTGGGGTCCATGATTCTGGATGTGGAATCCAGAGGGTCCACGGCAGGGTAGATCCCCAGCTCAGCAATCGCACGGGAGAGCACAGTGGTGGCATCCAAGTGAGCGAATGTGGTGGCAGGGGCAGGATCAGTCAAGTCATCAGCAGGCACATAG

Function

symbol description
atp5b Predicted to enable several functions, including adenyl ribonucleotide binding activity; angiostatin binding activity; and proton-transporting ATPase activity, rotational mechanism. Predicted to contribute to proton-transporting ATP synthase activity, rotational mechanism. Acts upstream of or within cellular response to interleukin-7; lipid metabolic process; and negative regulation of cell adhesion involved in substrate-bound cell migration. Located in mitochondrion. Is expressed in several structures, including alimentary system; central nervous system; eye; heart; and integumental system. Orthologous to human ATP5F1B (ATP synthase F1 subunit beta).

NR:

description
PREDICTED: ATP synthase subunit beta, mitochondrial-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU160196 True 503 lncRNA 0.46 4 11671768 11742750

Neighbor

gene id symbol gene type direction distance location
AMCG00000985 NA coding upstream 9122 11656653 ~ 11662646 (+)
AMCG00000984 NA coding upstream 49132 11620258 ~ 11622636 (+)
AMCG00000982 NA coding upstream 60114 11600268 ~ 11611654 (+)
AMCG00000981 cers6 coding upstream 74218 11558741 ~ 11597550 (+)
AMCG00000989 b3galt1,LOC106586201,LOC106581793,LOC106575305 coding upstream 161785 11508748 ~ 11509983 (+)
AMCG00000996 LOC106581781,LOC105022468 coding downstream 3409 11746159 ~ 11784742 (+)
AMCG00000997 NA coding downstream 43792 11786542 ~ 11795450 (+)
AMCG00000993 ppig,LOC106586208 coding downstream 60105 11802855 ~ 11811289 (+)
AMCG00001001 NA coding downstream 72853 11815603 ~ 11816325 (+)
AMCG00000995 NA coding downstream 83626 11826376 ~ 11839893 (+)
G127509 NA non-coding upstream 1226831 10442993 ~ 10444937 (+)
G127278 NA non-coding upstream 2294179 9363107 ~ 9377589 (+)
G127206 NA non-coding upstream 2588887 9081327 ~ 9082881 (+)
G127144 NA non-coding upstream 3031945 8638596 ~ 8639823 (+)
G127096 NA non-coding upstream 3376895 8294518 ~ 8294873 (+)
G127924 NA non-coding downstream 351391 12094141 ~ 12096863 (+)
G128074 LOC103479331,LOC106632289,LOC101486364 non-coding downstream 797331 12540081 ~ 12540318 (+)
G128101 NA non-coding downstream 863289 12606039 ~ 12655172 (+)
G128107 ola1,LOC107660044 non-coding downstream 896235 12638985 ~ 12676174 (+)
G128171 atp5g3,atp5g2,LOC101062993,LOC105908030 non-coding downstream 1094901 12837651 ~ 12841008 (+)
AMCG00000949 NA other upstream 1517581 10100283 ~ 10154187 (+)
G127134 NA other upstream 3051573 8617199 ~ 8620195 (+)
AMCG00000848 NA other upstream 6205787 5461301 ~ 5465981 (+)
AMCG00000734 NA other upstream 9857611 1805407 ~ 1814157 (+)
AMCG00000729 satb2,LOC107690605,LOC107569722 other upstream 9973195 1668845 ~ 1698573 (+)
AMCG00001002 myo3b other downstream 256914 11999664 ~ 12011425 (+)
AMCG00001022 NA other downstream 546200 12288950 ~ 12385042 (+)
AMCG00001098 NA other downstream 3407525 15150275 ~ 15184392 (+)
G128823 NA other downstream 3666362 15409112 ~ 15420880 (+)
AMCG00001114 NA other downstream 3717782 15460532 ~ 15463853 (+)

Expression


Co-expression Network