G128395 (neurod1,ndf1)


Basic Information

Item Value
gene id G128395
gene name neurod1,ndf1
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 14006269 ~ 14008671 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU160999
aataatttgcactttttatgagctatcaaaataaaacaataatccCATAGGAATTACATACACTAAGAAATCACATTGAAGGAgaaatgcaactttttttttttaccaaatgtTCAATACTATTCTCATATATAAATGGTTCAGAgatgtttaatataaatccCCAATGCGTTGTGGCAATACATCATAATATACAGgtttacaaacaaaagtacagtaCAAATTGATTCAAATTGAACCGGCATTACACGTCAAACAGCACTTAATCTGGACTGCATTGTACATGCAATATCTATTGATCTATTTTATGGAGTACTTGGTGTGAAAATTGTATCTATTGTTCTAATTAACAACTACAGGAATGGATTTGAACATCCTCATCAACTGCAGGCTCCAcgattttctttaattattttgatatgAAAAGCCATCGATTCTTCTTGGGTCAAATCGTGCAGTTTAGTACACGGGGAAAGCTGTCTTTTGACTTTTCGTAAAATAATGAAGAGTATCATGACTTGTGAGTAAAGAAACGAAGACAGTGCAAATTTAAGATGATAGTCAAGCAGCTTTTATGTGGGGATTGGGTCAAAAATATGCAGTATAACACGCTCTCCTGCAAAATAGCCATGTTTTCTTGTGCCCCTACTCAGGTGTCGTGAGTCTGGATTCGTAAGGAAAACAGATATTTCAGGTGGGATAAAATTGTCAGGATTGTGCAACCTTGCATGATTTCTTACAAGTAAAGAggaaacagaatacatttctaaGCACTTGACTGCTGgttaaatctttaaaatcattattattattatttcttataaaTAAGAGATAATTCtacttttcttttataaaatatCAATGGAGCTGCGTGGGTTAAAATAGGAAATCGACCTTATAAAAGTTCATTAAAAATTCTGTACAAaatcacaacaaaataattcagCATGGGATAGATAAGTAGTAAAATGCTggttgaaaaatatatatatttattttattttttttaattggcccATTATTAGTTCAAAAATTGCATAGTTTCCTAATTATTGCTTGTGGTTTTTGTTATATGGATCATATAATTAACACAATCTGAATATGGCCACCATCAACTTTCCAGAGTGACCTTAATATAGAAGCGCTATAGTGTATAATACATAAGGTGAATGGGAATTTGCACTCCCGCTTCTCCTAAAGGCAGTAacgacaataaatacatacatcagtTTAAGCGTGTGATATTTGCACTTTGCATCAGTGGTACCCGAATGCGTTGACGCTTATAAAACCAAAGAGTCATTGATTAGTTTCTGCAAAGCATAGGACTTAGATCTCGTTAATCGTGAAATATAGCATTGAGCTGGGCGCTCATGACTCGTTCATGGTGGGAATGTCCATCATATGACATAATGTTCTCAATGGGGATTTCGCAACGCGGTATTGAGCTGGAGTAAAGGGAAGCATGACCTTGTGGGCCCGCCAGGCTTGCAGCCGGATAGTGCATGGTGAAGGCATAATTCTTCTCAAACTCTGCTGAAGGCTCATGCTTGAAGGAGAAGTTCCCATTAACACTTAAAGGTGGGCTCAGGGGTCCATCAAACGAAGGGCTAGTGCATTCTGTAAGGGCGCTTTCGAAGAACGGCTCCAAAGCGCTTCCGTAGGAGTGTGGTTTGACGTGAAATATGTGGGAGCTGTCCATGGTACCATAGGGAGGACTGGGAAGACCTGGTGACTGATAAGAGTATGGATGGACTGGGAAAGAAGCACTTGCTGGTTGCATATGTGAGGGTATTTCCTGGCTCTGCTCTGGAAGGAAAGTTCTGGGGTTCAGCTGAAGGCAGCCTGCTACCAAATTAGTGGTGGGCTGAGATAATCCTTTGCAGAGGGCTTGGACAAAGGACATCAAGTCCGGACTTTTACCCGACCTAAGGATTTCGGAAAGAGCCCAAATGTAATTCTTAGCCAGCCTCAAGGTTTCTATTTTGGATAGCTTTTGCGTTTTCGAGTAACATGGCACAACTTTGCGCAGACTGTCAAGAGCTTCGTTGAGCCCATGCATGCGGTTTCTCTCCCTGGCGTTGGCCTTCATGCGTCTCATCTTAAACCTCTGCATCCGAGCTTTggtcattttcttcttcttgggtCCGCGTCTCTTGGGCTTCTGGTCGTcgccttcctcttcctcctcgtcTTCGTCGTCCTCGTCATCTTCAAGTCTACTAAATTCGTCGTCGTCGTCATCATCGCCGTCCTTGCTCATGGTTTCATCGTGCTCCccgtttttcttttccatgtcgTTTTCGTCCTGGGAACTTAAGCATTCATCAGTCCAGTTCGAGGTGCTCTGGGACTCTGGCATCATGCTGTGTTCTGTGAATGATTTTGTCATTATCCAACCCT

Function

symbol description
neurod1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within several processes, including endocrine pancreas development; negative regulation of Notch signaling pathway; and neuron differentiation. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Is expressed in several structures, including endoderm; nervous system; neural plate; neurogenic placode; and pancreatic system. Human ortholog(s) of this gene implicated in glucose intolerance; hyperglycemia; maturity-onset diabetes of the young type 6; type 1 diabetes mellitus; and type 2 diabetes mellitus. Orthologous to human NEUROD1 (neuronal differentiation 1).

NR:

description
PREDICTED: neurogenic differentiation factor 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU160999 True 2403 lncRNA 0.40 1 14006269 14008671

Neighbor

gene id symbol gene type direction distance location
AMCG00001076 NA coding downstream 24337 13963203 ~ 13981932 (-)
AMCG00001077 NA coding downstream 46226 13939711 ~ 13960043 (-)
AMCG00001073 nckap1,LOC107676070 coding downstream 161868 13820019 ~ 13844401 (-)
AMCG00001072 nckap1,LOC107739442,LOC107699024 coding downstream 186263 13806213 ~ 13820006 (-)
AMCG00001071 frzb,LOC106582261,LOC106586471 coding downstream 203790 13797604 ~ 13802479 (-)
AMCG00001080 NA coding upstream 45743 14054414 ~ 14084786 (-)
AMCG00001081 ub2e3,ube2e3 coding upstream 140353 14149024 ~ 14152858 (-)
AMCG00001092 LOC107691396,LOC107582034,LOC107556426 coding upstream 603015 14611686 ~ 14619008 (-)
AMCG00001093 dfnb59,LOC102786563 coding upstream 615754 14624425 ~ 14627710 (-)
AMCG00001091 NA coding upstream 724021 14732692 ~ 14761267 (-)
G128358 NA non-coding downstream 220356 13784033 ~ 13785913 (-)
G128355 NA non-coding downstream 226613 13779232 ~ 13779656 (-)
G128322 NA non-coding downstream 408903 13596785 ~ 13597366 (-)
G128242 NA non-coding downstream 725539 13247889 ~ 13280730 (-)
G128237 hnrnpa3 non-coding downstream 794414 13206874 ~ 13211855 (-)
G128614 NA non-coding upstream 575618 14584289 ~ 14585054 (-)
G128624 NA non-coding upstream 580354 14589025 ~ 14602330 (-)
G128627 ttn.2,ttn,LOC108435065,LOC107601611,LOC107714399 non-coding upstream 581831 14590502 ~ 14592589 (-)
G128631 NA non-coding upstream 610901 14619572 ~ 14623133 (-)
G128676 NA non-coding upstream 764891 14773562 ~ 14775639 (-)
AMCG00001068 LOC107576050 other downstream 232391 13767541 ~ 13773878 (-)
AMCG00001061 cycsb,LOC108273362,LOC108430847,LOC107740584 other downstream 646499 13356983 ~ 13359770 (-)
G128160 wipf1 other downstream 1254753 12732184 ~ 12751516 (-)
AMCG00001039 NA other downstream 1273668 12725694 ~ 12732601 (-)
AMCG00001041 cir1,si:ch73-167c12.2 other downstream 1302359 12697177 ~ 12703910 (-)
G128628 NA other upstream 584028 14592699 ~ 14598570 (-)
G128741 NA other upstream 1170570 15179241 ~ 15180322 (-)
AMCG00001118 hibch other upstream 1355396 15364067 ~ 15433469 (-)
AMCG00001119 ftcd other upstream 1400499 15409170 ~ 15432330 (-)
AMCG00001127 NA other upstream 1510945 15519616 ~ 15909126 (-)

Expression


Co-expression Network