G128662


Basic Information

Item Value
gene id G128662
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 14773618 ~ 14776723 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU161297
ACTTCTTTAGACTTTACTttttcagaaattatttattataggcAAATTGTAATCCATATACTTCAGATTATTACAAAGGAGTACATGTACAGAattgttttacacttttaagCTTACATATAGcgacatatttgaaataatgtccTTCCACAAAATCTCTTTAAACTCTGCATATCCACtgacatataaaaataattggtAAAGATTAATGTTTCTAAGACATTTATGTAGTTTCTTTTTTCAGCACAGTGATGCATTAATTCATAATccattttttcagtttgaatggttttgcaaagtacaataaaaatacagattttcatcttaaaaaatcattttgaaGGGCTAGTAAAACAGCCATAGTATACAAAAGATAAAGTAAATCAACTGAATAACAAACTCTTTAAAGAAATTCTACAGTTCTACATAATGTTTATTgtgttaatattgtatgaaagtgttttatatataacgGAAGACTTTCTGTCTTTCATAAGGTTAAAAACTGAAGTCAATGCTTCACAAGCAAACAAGTACAGTTTACAGGTGTGCGGACACTAACATTCAAAATTCTCTGCGCGTATCATTAAATCAAAAAAGAATTACAGCAAGGTGTTCCATTTCAGCTGTCTTTGGGAAAATACCACATTGaactaattgtataaaaactCACCAGAAAGtagtgctgtgtttttgttttagtttttaggaTTCCTATCACATAATGTTGTTAattttcatcttcatgttcTCAAATTTGCACCAATTCCATTTttgcatataataatatacactgcATTGTGTAAATGATACAGTCCTTCTTTTATTCATCCTTACTAGCCAATGTCCATTAATAGTCAATCATTGTGCTGTTGCTCTCTTTACTCTTTGgtgaagaaaaaggaaacattttctaATGTAACGCTTTTCTCTTCATTCTGTTACTATGACAATATTGTAGAACAAGATGATGGTTGCAGTTTTAGGTTTACTGTAAACTATAACGTACCCTTAACTACTAAACACTCTATGGTCATGATAGGCATAGATCTGATTACATATTTCCAAGGTACTTAGTAGAAAACCTTAAGACAACTGCTTCCATGGTTTCCATAGatcttatattttttataaaatgctttGTAATGTTCCATTAGTTAAAGGAAATATCTAGTACAATGCTGTTGCATGTTCAACTACACAAATTGCAGGAAGCTGATACAAAGTTTACAAAATGGAGTCCAAAACTTCGACATCAGATGAAAGCTTTTGTTACTttatgaaaatagtttttagcACTTTCATCATTCAATGTACAATTACACATATTGAAGTCCATGCTGTCTCCTACAAAGTAGGTTTCTGGAGTTACATTGTACCATAATATATAAACTTTATGGTGTATGAATAGTTTCTAACAGTAACAGCTGTAGTACtaatgcattaaataatgtACCCATGATgcttgaaaatataaataggtCTTACACCAACAGCAGTGGGGAACTCATGAAACTACCAATGTATGTCATCAGTTATATTATTGCTTTCCACATATTAATGCAGGACATGTGACGTGGAAATAACAATGGTAACAACTTccataaatattgtaatattgcaaAATATTACCATGGAACAGAGGTGTGATGAAGGAAGACACAACAAACGTGTctgttcattataattgtgtgcaCTCAGAAAAAGTGTTAAACTAGGTATGTACAAAGtatatttttctgtacaaaTAACCTTTTAAtcattgcaattatattttaagttttgcCAATTTGCACAATGTCCAGTGATGAATCAATCCCTGGTACCACATATGCTTCTTACTAAAACCCAAAAGTGGACAATAATGAGTTGTAAAGAAATTGaaccatattttaaataaacatttaaaaaaatgatcaaTGTAACTTTTGGGtgaagattaataaataatgtaaagaacATGCAgagaaatatgtaatatatatatcagggctgtcatttgataaaaaaaaatggcgattagttgattaatcggtAGATTAATTGGGCACTTATTAAAACAAGTGTAATAGTCTTTAAGCGGTTGTGCTATAACAATGCTTAACACAatggtaacaaaaataaaatagatatgtatattattatttaaaaaaacaaaaaacaaacactaaatcaCAGAGTGAGATTTTATCACAGATTATTTATCGCCCACCCAATGTGTGCGATTTTAGCGACTGATTCAGAGTTTGGAGATGGGGCCTCAATGCTTGAGAGCTatactaaataattataattataatgcaaaacaattacTGTTTAGCCGCAACATGGCAGAGGATTCTCCTTCCCCTCTCGGTGTTTGCTCGCAAACGATACTGTAAGCTGCGCACACTGcgcatttatttcaaatgaaacggaaaacctttactttgtcttcaatatttccTTCTCAATCCAAAGCTAGACTGTAGTTTTCCTATTAGCAGCttgtaaccctgcagtttgtgtgcAGATACCGTAGCTCTTGTGATGTAATTCACCTTCATAATTTAACACTGGAAGCGcagggctggtcagtttgaccgatttcatttgaaatctcTGTGTTgctgaatacactgtgcagaCCTGTtattgacttttcctaaatatatgtattaaatatgcctacgGTGTACCTCACCTGTCTAcggtctttcatgtgcttgaaaaacacatacattgtatagcattacaagtgtcttattgcaactgttgtcagattgagtggacacagTGATTACACTGCAGATGAACACTTGTCTCATTGTCTTAACTGTGCAGTGacgtgttaaaaaaaaataatacaaaaaaagtgctttgatgttatttatacctatcattttaatgttttatgttaatatctccatttaaatactgcatttgtactagttttaatttgataatttgaCATCCATTATACCACAGCGTTTAAAGACCTAtcggtgcttctagtgttaactgTATAATtgccagtcattataatgaaggaaaaaatTTAAATCTGCTCAGtcaaattgagaaaatattgatcgcCGATCAATTCATTAGATGATTAACAGACCCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU161297 True 3106 lncRNA 0.32 1 14773618 14776723

Neighbor

gene id symbol gene type direction distance location
AMCG00001087 LOC106581929,LOC108435067 coding upstream 45431 14696640 ~ 14728187 (+)
AMCG00001086 NA coding upstream 149767 14619523 ~ 14623851 (+)
AMCG00001088 NA coding upstream 171278 14522664 ~ 14602340 (+)
AMCG00001090 NA coding upstream 275999 14477042 ~ 14497619 (+)
AMCG00001089 LOC107698997 coding upstream 300119 14404322 ~ 14473499 (+)
AMCG00001095 NA coding downstream 221294 14998017 ~ 15035581 (+)
AMCG00001094 calcrl,LOC103374150,LOC105905912,LOC104930425 coding downstream 284278 15061001 ~ 15070971 (+)
AMCG00001102 NA coding downstream 453148 15229871 ~ 15241090 (+)
AMCG00001101 NA coding downstream 485028 15261751 ~ 15264010 (+)
AMCG00001103 NA coding downstream 492529 15269252 ~ 15283103 (+)
G128402 NA non-coding upstream 688688 14084286 ~ 14084930 (+)
G128294 NA non-coding upstream 1310136 13461666 ~ 13463482 (+)
G128255 NA non-coding upstream 1390974 13357491 ~ 13382644 (+)
G128171 atp5g3,atp5g2,LOC101062993,LOC105908030 non-coding upstream 1932610 12837651 ~ 12841008 (+)
G128107 ola1,LOC107660044 non-coding upstream 2097444 12638985 ~ 12676174 (+)
G128663 NA non-coding downstream 136 14776859 ~ 14779441 (+)
G128697 NA non-coding downstream 294350 15071073 ~ 15073902 (+)
G128747 NA non-coding downstream 433630 15210353 ~ 15211325 (+)
G128772 NA non-coding downstream 549271 15325994 ~ 15326220 (+)
G128815 NA non-coding downstream 581920 15358643 ~ 15359014 (+)
AMCG00001022 NA other upstream 2388576 12288950 ~ 12385042 (+)
AMCG00001002 myo3b other upstream 2762193 11999664 ~ 12011425 (+)
AMCG00000949 NA other upstream 4619431 10100283 ~ 10154187 (+)
G127134 NA other upstream 6153423 8617199 ~ 8620195 (+)
AMCG00000848 NA other upstream 9307637 5461301 ~ 5465981 (+)
AMCG00001098 NA other downstream 373552 15150275 ~ 15184392 (+)
G128823 NA other downstream 632389 15409112 ~ 15420880 (+)
AMCG00001114 NA other downstream 683809 15460532 ~ 15463853 (+)
G129365 zgc:162707,LOC107749877,LOC107592986,LOC107668408,LOC107596553 other downstream 3246337 18023060 ~ 18044251 (+)
G129453 NA other downstream 3769170 18545893 ~ 18547915 (+)

Expression


Co-expression Network