G129080


Basic Information

Item Value
gene id G129080
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 17144190 ~ 17147069 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU161853
gtgtgtgtgtgtctgtctatatatatacatacatgtaagaTCTTAACACTTGTTCCAGTGTTATTCCTTTCTTTCCAATTATTTGTCAAGACAAGGTTGAGGGAAGGGCCTTCCCTGTTTTTAATGTAGCTGGGGTGAGCCATATAAAGCAACTGAATAAAACCCCAATCCATGTGCAGTCATTGatctatttatcttttaaaggAGTGCATTAAGTTCACAGGGCCTGCATTTTGGGTAAACTTATTTGTCATTCCTGCTCTCGAATGAGTAATCCTCACGTGTGCAGTAAACACGAGGAAATTGCAGTATTTGGGGATCAGGGTAACAATCCCATAAAAAGGCAATCATGCTACAGCAGctctgggtgttttttttcctcccttgtCTTATAATATGCAATGAGAGGCCATGGCACAGTATTCACATGCCTTCATACAATAATCACATTCAACATACAACAGCAGTACTATATGCCAAACCATCATAGTATGCTCAAATGTGTGATTGCCTTATTACAGTGAAGCAGGGCAAAGTAATGAATTTGTTGAATGGGTCTCTTAACCCAACAACATAATGACACCAGTTTGGACTCTGGAATGTGTTTAAGTGTTAAATAAGAAGCTATTCAAACCTTTCGAAGCATGTTGTAAAATGCCTACATGCCTTAACCATGTTTTCCAGTTCGGATGAATCACTAAACCATCACAAACTCCTAATTAGGTTCCGTCTTTATTAACACATCATCTTTAAGACTTTAACATGTGATTTAGGTCTCAGATTGGCAATGCTGGGGAATGTGTATCTCTACCCAAAGAGCAGTGGAGATGTCTGTTGCAGAATCTCAGAGTTTCTTTGGGCAGGAAACACCTCTGGACTGAGAAATGTCCAATTCTAGGGCTGATGAGTTCAGTCTGACCGAGATGCCAGTCAGTGCCAATgtggatgtttatttttctacaaaCAGCAGCATAACAGCAGGACAAGTCCAGtcaattgttgttgttttgtttttgttctcttccTTGTAaaattgtacatgttttttaaatagaacaaacgtctgtaaaaaaaaaaaaaaaaacgtaaaaaaacaaacaaaacaaaaacagaaaactgccTTCGtgttatatattacatattaatctTAGTACTGTGGTCCAGGAAATATAAATCAACACATGCCATAAAGAATTAAAGAGCAATATGTATGGAAATAACATTTTGGTTTTTATAAGCACAatgttttcttacattttccAGTACTTGAATTTGATTGTCTTCAGATTGCTATTTCATGAAACATTGAGTGTAAGTTGCTCTATAGGTTGTGTTGGaataagtttaattttaatttttttttttttttttttaattcttgccAATGCTTGGGATACACTTTTTAACCTTTGTTGGGAAAGGGCTATTAGAGTAAAATATGAGGCTTAACGGTCTTAATAATAGCCActtcataataaaactgaaaacgtATTCTTTGCAATGTTTGCAGAAAGGGATGCAGCCTCCTGGTGAAGGTACAAAAGGTCACGTCAAAGGCCCAAACTGCGTGTTTcttggtattttattatttttgtgaatagcatcgtaaaaaaaaaaagttttaagttGAAAACAACGTATGTAAGCTATGTGTTTCCAAGACATAACAATTGCACTTATTTGGCATTCTAATTTAGATTTTACCTCCCCTTCTGCATTGgttgcgtgtttgtgtgtgtgaatgtatatttgtatgtatgttacACACTGCAAAATTTTTATcctacaatattattttagtgtCCAAAATAAGCAATATCTTATTATACCATAGGGTTAATTCTTTATGTGGAACATGGTTCCATACATGCACATTCCATGTTGGTAGAATCTTCTATGTGCAAGAACTTACAATCACCGAATTTTGTATTCTTGTGAATAATGTGcaactttattatatttgtacagTTCCTAATCAACaatcaagcatttaaaaaaataacttgaatactgtctgtctgtttatataACTTTGGTCACTCCACTTTACTTACAATGAAATGTTGTGATAAGAAATGGCATGTGAGGGCTGCTACTACAATACTCTTGTTTGCAAACTGCAAGAGTGCCAGGATTGATTTATCCCAAACTTTGGTTAGCCATTCCCTAATGTGTCTGGAAATGTTGGGTGTACATGGAATGCAATGGCATTTTCATATCGCTtgctctttaaataaaacagtactGGGATTCTCTTGTTAATGGAATTAAATTCTTGTTCAAACCTCTTACAATGGAATGTTCTAAACCCAAATGTGTTGGaaatatgaatgaaagaaactcagtattaattacaaatttaGTACTCTAGAAGAAGAACTCAAGACAAATGGAAAATAGCATATCCATGTGCTAATACATTTCAGTAAGCACATacaatctgttttaaatgtgtaaaaatgttgGAATAGTGGTCATTTGATAGGACTTCCCATTGTATTTGGTTACCAAAGGAGAAACGGAGATGTACTCACACTAGTTGTGTTTAATTATGTGGCCTTCTGccttttactgtattttctcctgtatttaaacacatgcaaatacatatatattatttggtaATTGCACAGtaataaagcaaacaagaatTGGCATTAATATATGGTATAATATACTTTGTGATCTGGGAACACtgagtttaaattaaaacaattgtaacCTAGTTGTGAAAGTTtttcttataattattttactgtatggAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU161853 True 2765 lncRNA 0.34 2 17144190 17147069

Neighbor

gene id symbol gene type direction distance location
AMCG00001154 NA coding upstream 1203 17125328 ~ 17142987 (+)
AMCG00001153 NA coding upstream 22825 17051725 ~ 17121365 (+)
AMCG00001157 LOC107389370,LOC101174306,LOC103461921 coding upstream 128589 17011862 ~ 17015601 (+)
AMCG00001152 NA coding upstream 151159 16991598 ~ 16993031 (+)
AMCG00001149 NA coding upstream 171707 16939142 ~ 16972483 (+)
AMCG00001158 NA coding downstream 122942 17270011 ~ 17296678 (+)
AMCG00001159 NA coding downstream 150073 17297142 ~ 17308586 (+)
AMCG00001161 pcbp3,pcbp1,LOC108266078,LOC107657516,LOC107660579 coding downstream 237520 17384589 ~ 17398019 (+)
AMCG00001162 LOC107584166,LOC107602160,LOC107657503,LOC107660577,LOC107728914,LOC107714365 coding downstream 274000 17421069 ~ 17421866 (+)
AMCG00001169 NA coding downstream 577179 17724248 ~ 17725586 (+)
G129071 NA non-coding upstream 251829 16889638 ~ 16892361 (+)
G128958 NA non-coding upstream 1082011 16022258 ~ 16062179 (+)
G128941 NA non-coding upstream 1219380 15923032 ~ 15924810 (+)
G128939 NA non-coding upstream 1222151 15921674 ~ 15922039 (+)
G128938 NA non-coding upstream 1222616 15921373 ~ 15921574 (+)
G129221 NA non-coding downstream 340323 17487392 ~ 17550791 (+)
G129255 NA non-coding downstream 544438 17691507 ~ 17692526 (+)
G129343 NA non-coding downstream 824940 17972009 ~ 17976936 (+)
G129552 NA non-coding downstream 1649781 18796850 ~ 18802040 (+)
G129597 NA non-coding downstream 1941079 19088148 ~ 19090238 (+)
AMCG00001114 NA other upstream 1680337 15460532 ~ 15463853 (+)
G128823 NA other upstream 1723310 15409112 ~ 15420880 (+)
AMCG00001098 NA other upstream 1959798 15150275 ~ 15184392 (+)
AMCG00001022 NA other upstream 4759148 12288950 ~ 12385042 (+)
AMCG00001002 myo3b other upstream 5132765 11999664 ~ 12011425 (+)
G129365 zgc:162707,LOC107749877,LOC107592986,LOC107668408,LOC107596553 other downstream 875991 18023060 ~ 18044251 (+)
G129453 NA other downstream 1398824 18545893 ~ 18547915 (+)
G129442 NA other downstream 1408082 18555151 ~ 18558174 (+)
AMCG00001203 NA other downstream 1741215 18888284 ~ 18889724 (+)
G129594 bzw1a,LOC108414345,LOC105905677,LOC103358003 other downstream 1896235 19043304 ~ 19142145 (+)

Expression


Co-expression Network