G129125


Basic Information

Item Value
gene id G129125
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 16923711 ~ 16995408 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU161912
TCCAGTTCACACCATTGTaaacttctttatttttgtttctatgaAACTTtcaataggaaaaaaaaatactattggtacaaaaaaaaaaaagtatagaatttttttcaaaatataaagtataaaaagtaaaacaagaacaaatcaaTTGCAGtcacatttcacttttcaccaGGAAAAACATCCAGTTTGGTAGACAATATGAATTAGTGGCATCCAAAAGTGGAATGTGTAGCTGAATCAAAAGCAGGGATGATAAATGGTATGGAATTGATAGTTTCATGCATTCATTACTTTATTTGGATGGTATGCAAGCTGCTCTAGTAAATAGAGGCTTTTAAACCAACTGTTGCAATTAGAACTTAGTCAAATGTATTGTAGTTTCACTAGTCTTGTTTTGAAGGTCCATGGTCCAATGGGAATTAATCACTTGCATTAGAAAAGGGGAGGTGGGTGGTTGAGGTCCATATTTAGGCTTTACAGAAAGACGtttgaataaactgaaaagTCAGAATAGTCATCAGGACGATCACCACTCCTCTTGCAGTTACCATGGGAAggtcaaaatgtcaaattaaactaaaaatgtacttttcaaacggatttccattttaaaatgcactgctcACAAATCTCAAAGATCCAATGCCCAAGAACTCACAATTcagctatttttgtatttctcgGCAGCTATAGAAAACTGGATCACACAAGATTGTTGAACAATGCTTTAGGGTTagacatttataaaaacacCACAATCATTATTGCTAGGTGACCtttattgcaaaaaaataaatccaaaatataACTTAGCCATtacattgaatttattttaacaggtACTTCAAAAAGAGAAATCCAAAATCATCCCACTAATTTTGTATGCATAGTTCTCAAACAGTCAAATCAATTCAGCTACACATTCCATGGAAAGCTAATGTTGTTCCTGACAACTGTAGCAAAAAGTAAAGAACACAGATTAGTGAATTTGTAGAAAGGTGACTGCCAAAAGACTGAAATGTAACAcctctcccaccctctctctctctctctctctcgcctccCTCCCACCCGGTCCCTAGCACTGGAAGACTCAAGTAACATTTcctaagaaaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatac
>TU161913
TCCAGTTCACACCATTGTaaacttctttatttttgtttctatgaAACTTtcaataggaaaaaaaaatactattggtacaaaaaaaaaaaagtatagaatttttttcaaaatataaagtataaaaagtaaaacaagaacaaatcaaTTGCAGtcacatttcacttttcaccaGGAAAAACATCCAGTTTGGTAGACAATATGAATTAGTGGCATCCAAAAGTGGAATGTGTAGCTGAATCAAAAGCAGGGATGATAAATGGTATGGAATTGATAGTTTCATGCATTCATTACTTTATTTGGATGGTATGCAAGCTGCTCTAGTAAATAGAGGCTTTTAAACCAACTGTTGCAATTAGAACTTAGTCAAATGTATTGTAGTTTCACTAGTCTTGTTTTGAAGGTCCATGGTCCAATGGGAATTAATCACTTGCATTAGAAAAGGGGAGGTGGGTGGTTGAGGTCCATATTTAGGCTTTACAGAAAGACGtttgaataaactgaaaagTCAGAATAGTCATCAGGACGATCACCACTCCTCTTGCAGTTACCATGGGAAggtcaaaatgtcaaattaaactaaaaatgtacttttcaaacggatttccattttaaaatgcactgctcACAAATCTCAAAGATCCAATGCCCAAGAACTCACAATTcagctatttttgtatttctcgGCAGCTATAGAAAACTGGATCACACAAGATTGTTGAACAATGCTTTAGGGTTagacatttataaaaacacCACAATCATTATTGCTAGGTGACCtttattgcaaaaaaataaatccaaaatataACTTAGCCATtacattgaatttattttaacaggtACTTCAAAAAGAGAAATCCAAAATCATCCCACTAATTTTGTATGCATAGTTCTCAAACAGTCAAATCAATTCAGCTACACATTCCATGGAAAGCTAATGTTGTTCCTGACAACTGTAGCAAAAAGTAAAGAACACAGATTAGTGAATTTGTAGAAAGGTGACTGCCAAAAGACTGAAATGTAACAcctctcccaccctctctctctctctctctctcgcctccCTCCCACCCGGTCCCTAGCACTGGAAGACTCAAGTAACATTTcctaagaaaatatatatatatacatacatacacacacacacatatatatatatatataaaaaacaaaaagttatatCTTGAACATTTAAGATTTCTCTTTTGCATTCTGAAAGCAGCAAGTTGGAAGAGTATACGCTCTGTGAAATTTTCCCAAATTActtctcttcaaaacaaaacactaaaacaaatttTGATTTTACAAAACCAATAAATCTAAGACTTAAATCAAGAGAATGATGATTTCTccaaaaattgttttaatttacagtttaaacaataTGGTAAATAAACAGCAATGAAGTACAATAAGATTCACGAGATGAGGACATTTCAAGCATTTCCCAGGTTATTTGTTGGTTACATTGTTAAATTTGGACAAAGGCACGGTTCTGGCCTCGGTAACATCTCGGCATTAAGGTGGTGAACAGATGTCAGCTGTGTCAAGGCAGCGAGTAGTGAATAAACTccagtcttgtttttgttgcctTCTGCTCTCTGCAGAACCTGTGCAGTAATCTGCCATACTAAACTAAGTATATATGGCTGCTGTACCATTTGGGggaagggaaaaataaagttCCCTCATTACTTAAAACTGCAGCACTTCAAGTAAAAACAAGACTATCGTTTCCCCCTTTTCTGTCTCACACATGTTCGACAAGCCCTGGCCAGTGCCAGATTTCACAGCTATAAAAATggttgtggtttgttttcaccTAATTTActagacaaaaaatatattgaaaaggaaaaaatagacTTAGGAAACAGATTGGTCTATAAAAGGTTTAACATGGAAAACGCCAGTCTATTTTTTCTGGAATGATTTGGAATGTAAACGCCAAGTATGTTGAGATGCAAGGGTGGAGGGGAAAAATAAGAACTGCAAGCTGGTTTCAAAAATCAGAAGTGTGGCATAACGTTACAGAACTGTAAAATCACCTTTGTAAATTGACAGCATTCCAGTTTGAGATCCACAACAAGCAGGAAGTGCACACATTGTAGGTGAAGTTTGAAAGCACTTCGGCTGAATGTGCTCAAGAAATTTTGCTCAATCAGAACCCAATCTGTGCAGCTCTCCTTAAAAACCACTggccttaataataatattaggcACATTATAACCCTCCACCGAGTCAAACACCCAACACAAAGGTCTTGGTGATTCAGTCACAGATTTCCCCACCATCAATCTGAAGTCTCAGTTCTGTCGACGGAAAAGCTTTATTACAAAATCCAGTATGAAAAGGTTCAGGCCCGTAGTCCTAaggagaaataagaa

Function

GO:

id name namespace
GO:0021591 ventricular system development biological_process
GO:0021592 fourth ventricle development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU161912 False 1179 lncRNA 0.33 2 16923711 16995408
TU161913 True 2388 lncRNA 0.36 2 16993001 16995408

Neighbor

gene id symbol gene type direction distance location
AMCG00001150 NA coding downstream 50984 16857154 ~ 16872727 (-)
AMCG00001145 NA coding downstream 524281 16395035 ~ 16399430 (-)
AMCG00001144 arpc2 coding downstream 601975 16311684 ~ 16321736 (-)
AMCG00001143 NA coding downstream 618028 16297028 ~ 16305683 (-)
AMCG00001137 NA coding downstream 648237 16260396 ~ 16275474 (-)
AMCG00001155 LOC107586362 coding upstream 3209 16998617 ~ 17000562 (-)
AMCG00001160 NA coding upstream 318657 17314065 ~ 17320529 (-)
AMCG00001164 NA coding upstream 445308 17440716 ~ 17486990 (-)
AMCG00001167 ube2g2 coding upstream 491989 17487397 ~ 17496135 (-)
AMCG00001163 NA coding upstream 528044 17523452 ~ 17537225 (-)
G129065 NA non-coding downstream 43226 16876311 ~ 16880485 (-)
G129042 NA non-coding downstream 349112 16520181 ~ 16574599 (-)
G129033 NA non-coding downstream 545396 16353435 ~ 16378315 (-)
G128976 NA non-coding downstream 896131 16024158 ~ 16027580 (-)
G128890 NA non-coding downstream 1459922 15462717 ~ 15463789 (-)
G129213 NA non-coding upstream 336052 17331460 ~ 17331681 (-)
G129273 NA non-coding upstream 715489 17710897 ~ 17761905 (-)
G129286 NA non-coding upstream 783508 17778916 ~ 17782649 (-)
G129358 NA non-coding upstream 976601 17972009 ~ 17976917 (-)
G129370 NA non-coding upstream 1061732 18057140 ~ 18057666 (-)
AMCG00001127 NA other downstream 1014585 15519616 ~ 15909126 (-)
AMCG00001118 hibch other downstream 1490242 15364067 ~ 15433469 (-)
AMCG00001119 ftcd other downstream 1491381 15409170 ~ 15432330 (-)
G128741 NA other downstream 1743389 15179241 ~ 15180322 (-)
G128628 NA other downstream 2325141 14592699 ~ 14598570 (-)
AMCG00001156 NA other upstream 130951 17126359 ~ 17187630 (-)
AMCG00001165 LOC100709166,LOC105019893,LOC103392195,LOC107668404 other upstream 518978 17514386 ~ 17521270 (-)
AMCG00001193 NA other upstream 1529325 18524733 ~ 18532689 (-)
AMCG00001196 RPL37A,rpl37a,zgc:171772,rl37a,LOC107564751,LOC107567628 other upstream 1559827 18555235 ~ 18558217 (-)
G129566 NA other upstream 1893357 18888765 ~ 18889757 (-)

Expression


Co-expression Network