G129358


Basic Information

Item Value
gene id G129358
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 17972009 ~ 17976917 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU162197
tgtacactTGTAGAACAGCTCttgaaaatgcaacatttgCTGTACTATGCAGTGGACATTTCATATGTAGTGTAGCTTTCTATCATTCCTTGGTCAATTTAGGTTAGGTTTGTAAATGGCTATTGTTATAATTCTGTTGCCCCCAAgtaatttttatttctgtcaatttattttcctcatgacaccaaaataatttgattaaaagaaaacaaaaaaaggcagaTTTGGCAGGCTTCAAAAAAGGCCACAGAATACGACAACAgttacaaaacatacacaaaatcaACCCTGAGAAGTTCACATGACAATAGATTCAACACTTGAAGACTTTCTTTATTGCTCATATCCAGGTTGGTCGGCAGTACAGTTCACCCACAATTCAAAAGCACAGCTTGGCTGTTACCATAAGGAATGAATCACCTCCTAAACCAGCATGAAAAAGCCTTTGTACGTTTATCACAGGTGTCGAATGGTAACTGGTGGCAGGAGATCTTTTCCTCTCAGATTGTGAAAAGAACGAAAGTACCTCCAGTGGTGAAATTTCAGTTTAGGAATGAATCCGCCTAAGCTATTACTCATGTATgtgaaatgcaataaatgttTACACCCTATGACATTTCTCCCATgcaatgtctttaaaaaaacaaaagaaattgaaaaaaggaaaggaaggaaTCTATTAAAGAATGAAGTTCTAAGTAGTCATGTAATATTCTCATGTTCCCTGCTAAGAACCTCCACGTAACCAATCTATCTTGCCTTTTGAAGACAGTTTTCTGCTCCTTCTGTGATTGAGTTCATGATATGATTGAAGCCTCAGAAACTCTACACAGGAAAGACACACATTTGCTCTCGTGTTGCTCCCCACTCCACCTCCAACACGTCTCCCAATTGCATTCCCTAATGTGAAGTATTTTCCATGCCTTCAACGACGACATGCATGACGCCTTTAACCGTAAAATCCAAATCTCTCCAAAAGAAGGATCACTGATTTCTGTGCTAACCAGAATCAAACGGCTCAAAGAGAATCTCCTCCTTATAATGAGAACTTTGAAAGAGCCCATCACAATTTCCCATAATCCCATAATTTCAAAGCAGTTAAGAGATGAACATCCCATCCCTGGGCGGTACTGGGAACATTTTACACTCCGGAGAACTCCTGATATTTCTCCAAATATGATAAATCAGGTCTGCTTCTCCAAATCTCCAAAATACACACTAGGAATTCCAATCAATTACGTATAATTCTAGTGTTCAGAGCCTTATTACAACACAGAACATACGAAAAATATGTCCCAATGAAAAATATACCTCCCAAGCCATTCTGCTCAAAACAATTACCCAGCCCTGGTGGGAGTGCTTCACTGCTCTCAAAATAAAGCATCTTCATTTCTGACATACTAAAAAAAGTTACAATCCTCAGTTAGTTTTTTTCAagtaaaaaaacagcataaacTTCTTCTAAAACTTTAGTaccaaagaaatgcaaatggaCGAGTCTGAGGACATTAAGACTACCACACTTGCCTGGGTGTTAGTAGATTATCAATTCATAAAACCTAATCACAGCATGTCTTGAACTGTCTTTGGACATACAACGACATACTtgccagaaaataaaattacaccTATGGACTCGAGGTGGAAGTGATGCTCTGAAAaggttgcattttcttttcatctgcaCGTGAAGGAACAGACACCACATTATTGTTCTGCAGAGGAATTCAGATGCCCTAGCATATACTTTAAAACTGCAGGAACTCACACACTTTCTCAGTTTCTCGATTGAGAGCCCATCCGTTTGTTTTAAAGCGATTCTGTGTTCTATAGATGGGGTTCCCATATTCTCAGTCTTAACTTGTATCGGATGATGGTATCTTCTTGACTGTCTCTGTGTCACCTCAAGTGCCCGGTTATACACCACGGCAGGGCACGCTTGTGTGTTCGCAAGCGAGTGTTTTAAGTGTTTGGTTGATTGACTATTGATTTATATAGTGGAAAAACATGCATAGTCAATGTGGTCTGTGaagaacacaaaatacaatgtgaCTTTTGTTAAAGGATCTAAAAGCTGCATCACTCTGATTCCCAGTATGTCAATAGTTtgccacctccacctccacctctttttttcctttaaagaaataaaaacaaaatcagaaactTTGAATTTAGAAGTCTGGAATTCACGGGATATGACTTGAATGAGATGCGCAATTTGAAAATACTGCGTATTTGAATACTATCTCCTCACAGCTGTGTGCAACAACACACTTGAGCATGTGGGAAGCaggttttttttcagtttgtgtcaTTTGCATTGACTtgattaaatcattttgatacatttatttgagaatTACAGGAAAAGCATGCAGGTCAGTGGACATCTATTTAAGAAGAGAGGTGCAAAGTTAGTTCAGTTTGAAAGCAAGCTTCACAGATCACACAAAACATGGTTGCAGACTGCAGAAAACTGCCTTTAAAAGGCTCCTTCGGAaggttttatttatctattaatccattaaaaacaaattacccGAAAAAGTTGTCTAAAACTTCACTGCCTTTAAGTCTCAGTGTGTATATGTATCAATATGTGTGTAGGGGGTGGAGGGATTGTTGGGTTAATGGCAAAACAGCTGAGTCTGCATTAGTCCTCTATTGTACATCTATGTTTACAGATATACAGGTTTTCCTCCAATACACAGTAACAGCCGAAACACTAGTCTATTATAATGTACTATAGTAAAGGCTAGTGTTATATACATGTTAAGGTCCTGtctctgtttaaatgtatttgatttcagCTTTACACCATCCCTGGAACAGAACCCTATCTGGGCTAGTTGGTAACAACAGGCTGGGTTACAATCATATTTTGTTAGCTagatatattttgtctttttttttcacagaacaCTGTTTGCAGTAAAGGAAACTGGCATTGCAGTCTGTTGGTACAACAgcatgtttgttgttgttgacgttgttgtttctttgttcatGAAATCAGTACACATTATCTCCTTCGACTCAGAAACATTACGGGCATGTACCCCTTCAATTTCGTTCTCACGTTGAGCATGGTTATTCAAGGTCTTtatcaaaaaaagaaaggaaaaaaaaagaagaaaaaaaagaaaggttgaGAGGTTGTCCAGCCAATGGGAGAGCATTGATTACAATACAGTTTGAATGCTCAAGACTCTTTCCTCCCGTTCAGGTTGCTTGGACTTAAAAGTttcaactatttttttttcttgttcttttcttttattaaaaaaataaaaaaaatgctcaaAACTATCAGTTTTACAAGGCATACAAAATCTCgaaaaagggaaattaaagaaaagactGAGGTACCCTTACACCTGAGGTAGATCACAATATTGAAATGCGCACTGTTCCATGTCCTGGGAAAATgatctctttattttatttatttatttatttatttactttaatgttttctttttgtattgatCGCATCATTATCcatcatttatattattaatattcatgttttcaaaaataaaacacttcccttcaatttcatattgaaatcaaatttaaaatatagtttaaaaaaaaagtttttagttttttcttctcatcacaaaataggaaaaaaaatatatttataaacatttctctctctatatatatacacacacaaacctgtgTGTATTTGCGCTAACCTTAAAAAGTCTGGAAGATATAGCTAAACCGATAGCTCATGACGAGAGAGAAAGATTCTCCAATCAGTAACAGTTAAGGCAGCATGTTTCCATGGTGATTATATAAAGCACAAAAAACAGGGCCATCCGTACCTGCACATCCAGCAAATAACTGCCtgggatgaaaaataaaaacaaaataaacaaagacaaggaaaaaaaaaagaataatcccGCTGACCAACTCTAGTGCCGGACACGGATGGGAAAAAGGctgcatattttacattcacAGTTGTTAGGCCATGACAGAGAACTCCCTGATCGAGAGGTTAAAGCCAAATGTTGTTGTGTCGTTTAGTGTGGATTGGATTAGAGGGAAGGGCGAGAGACACTGCCCCTTCTATAGCAGCGTTCCCCGGCTTGTTCAGCGCCCCCCCCCTCACCCTCCCACTATAAAGCCAACCTTTATAGTACAAATCTATCAACCATCGCGGCCCTGTGTCACATTGTTCCTCTATAGTGCTGTTGAATAGTGCTCAATATAAGGCAGAGAATGTGGAGCACATTCTGTTAACTATGGCTGCGTTACATTAAAGGAGCACAGCATTAAGACATcaatttgtgtgcatttttcttttctttttttctctgtcttttttctccctcttcaAACAGCCAATTCGGAAACTGCttccaaacttttttttttttttttcctggacagtgtttttaaattaggaCAGGTACCAtcttttttgttgctgtttttttttttttttttcttcttatcatGATCCATTCGGGGAAGCGGAAGCCATCTCAAAAAAACATCAGAATGCTGCTCGCTACTGCtcagttgagaaaaaaaaatgacagtatAGTATGCAAAAAGCTAGTTGATAACCGTTAAGCAAAGAGTATGTAAAAAGACTGTGAGCTACAAAGagatgaaatattaaaatctctTCCAAAGGGACGGTATCCCTTGTGTTGGCACACACAGGCTAAGTAACAAAGATCCATAACAATCCGCTAGACTTtctcaaggtttttttttctttttttctctgcttttttcttaaaacagttGATTCCAAATGCACACAGATAAAAGATATGCTCAAACTGCTGGCAGAAATATGTTCTACTGCCCAATATGAATCACTCTGACTACTTCAAGTCTAGAAAACCTATTTTTATCTATGAAAAAAAGAACctgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU162197 True 4909 lncRNA 0.37 1 17972009 17976917

Neighbor

gene id symbol gene type direction distance location
AMCG00001176 NA coding downstream 115220 17806233 ~ 17856789 (-)
AMCG00001171 NA coding downstream 203557 17757078 ~ 17768452 (-)
AMCG00001172 NA coding downstream 242208 17728998 ~ 17729801 (-)
AMCG00001166 LOC103370188,LOC102799206,LOC101480403,LOC102206624,LOC102301787 coding downstream 378148 17544583 ~ 17593861 (-)
AMCG00001163 NA coding downstream 434784 17523452 ~ 17537225 (-)
AMCG00001179 tmem41a,LOC101174769 coding upstream 920 17977837 ~ 17989616 (-)
AMCG00001185 vps8,LOC107699090,LOC107719737,LOC107710204 coding upstream 196966 18173883 ~ 18236780 (-)
AMCG00001187 NA coding upstream 323916 18300833 ~ 18318933 (-)
AMCG00001194 NA coding upstream 530632 18507549 ~ 18517536 (-)
AMCG00001192 NA coding upstream 562078 18538995 ~ 18547799 (-)
G129286 NA non-coding downstream 189360 17778916 ~ 17782649 (-)
G129273 NA non-coding downstream 210104 17710897 ~ 17761905 (-)
G129213 NA non-coding downstream 640328 17331460 ~ 17331681 (-)
G129125 NA non-coding downstream 976601 16923711 ~ 16995408 (-)
G129126 NA non-coding downstream 1030727 16940667 ~ 16941282 (-)
G129370 NA non-coding upstream 80223 18057140 ~ 18057666 (-)
G129394 NA non-coding upstream 263539 18240456 ~ 18265272 (-)
G129437 NA non-coding upstream 433189 18410106 ~ 18412750 (-)
G129438 NA non-coding upstream 435937 18412854 ~ 18413433 (-)
G129440 NA non-coding upstream 436568 18413485 ~ 18415110 (-)
AMCG00001165 LOC100709166,LOC105019893,LOC103392195,LOC107668404 other downstream 450739 17514386 ~ 17521270 (-)
AMCG00001156 NA other downstream 784379 17126359 ~ 17187630 (-)
AMCG00001127 NA other downstream 2062883 15519616 ~ 15909126 (-)
AMCG00001118 hibch other downstream 2538540 15364067 ~ 15433469 (-)
AMCG00001193 NA other upstream 547816 18524733 ~ 18532689 (-)
AMCG00001196 RPL37A,rpl37a,zgc:171772,rl37a,LOC107564751,LOC107567628 other upstream 578318 18555235 ~ 18558217 (-)
G129566 NA other upstream 911848 18888765 ~ 18889757 (-)
AMCG00001251 NA other upstream 3263565 21240482 ~ 21270383 (-)
AMCG00001264 NA other upstream 3630920 21607837 ~ 21648508 (-)

Expression


Co-expression Network