G129370


Basic Information

Item Value
gene id G129370
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 18057140 ~ 18057666 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU162213
NNNctgttttgtttgacaattttagaaataaaatctgtcaacgcagAGAAATATCTTAtaattcctgtttaactgtttagtctgaaattgacacacgttaatagacactagattataggtggccctgcctatccttaatcattgaataataatcagttaagggaaattgtggtaacaagaaatgataggatctttctcggcacccaaacgtaaatgagactgatatatataacgagaagttatttggcataaatactaacctgcattagttatttaatgtccgacaaacaatactaatgagagactcacctttttcttactaactggtattgtagtcaatgtgtttgtaattttgtgtaacgttttgtaTGTTATATGTGATTCCATGGGTTGatttttgatttggtcacagaagtgatttgtctttgatcttgagtgaattttaattcgtttttccctttttgtataactactgtggtgctacattttatctttgtttttaataaatttgagaatttatatctttg
>TU162214
NNNctgttttgtttgacaattttagaaataaaatctgtcaacgcagAGAAATATCTTAtaattcctgtttaactgtttagtctgaaattgacacacgttaatagacactagattataggtggccctgcctatccttaatcattgaataataatcagttaagggaaattgtggtaacaagaaatgataggatctttctcggcacccaaacgtaaatgagactgatatatataacgagaagttatttggcataaatactaacctgcattagttatttaatgtccgacaaacaatactaatgagagactcacctttttcttactaactggtattgtagtcaatgtgtttgtaattttgtgtaacgttttgtaTGTTATATGTGATTCCATGGGTTGatttttgatttggtcacagaagtgatttgtctttgatcttgagtgaattttaattcgtttttccctttttgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU162213 True 527 lncRNA 0.31 1 18057140 18057666
TU162214 False 465 lncRNA 0.32 1 18057202 18057666

Neighbor

gene id symbol gene type direction distance location
AMCG00001179 tmem41a,LOC101174769 coding downstream 67524 17977837 ~ 17989616 (-)
AMCG00001176 NA coding downstream 200351 17806233 ~ 17856789 (-)
AMCG00001171 NA coding downstream 288688 17757078 ~ 17768452 (-)
AMCG00001172 NA coding downstream 327339 17728998 ~ 17729801 (-)
AMCG00001166 LOC103370188,LOC102799206,LOC101480403,LOC102206624,LOC102301787 coding downstream 463279 17544583 ~ 17593861 (-)
AMCG00001185 vps8,LOC107699090,LOC107719737,LOC107710204 coding upstream 116217 18173883 ~ 18236780 (-)
AMCG00001187 NA coding upstream 243167 18300833 ~ 18318933 (-)
AMCG00001194 NA coding upstream 449883 18507549 ~ 18517536 (-)
AMCG00001192 NA coding upstream 481329 18538995 ~ 18547799 (-)
AMCG00001198 LOC107581552,LOC107556299 coding upstream 490892 18548558 ~ 18553602 (-)
G129358 NA non-coding downstream 80223 17972009 ~ 17976917 (-)
G129286 NA non-coding downstream 274491 17778916 ~ 17782649 (-)
G129273 NA non-coding downstream 295235 17710897 ~ 17761905 (-)
G129213 NA non-coding downstream 725459 17331460 ~ 17331681 (-)
G129125 NA non-coding downstream 1061732 16923711 ~ 16995408 (-)
G129394 NA non-coding upstream 182790 18240456 ~ 18265272 (-)
G129437 NA non-coding upstream 352440 18410106 ~ 18412750 (-)
G129438 NA non-coding upstream 355188 18412854 ~ 18413433 (-)
G129440 NA non-coding upstream 355819 18413485 ~ 18415110 (-)
G129465 NA non-coding upstream 419951 18477617 ~ 18480956 (-)
AMCG00001165 LOC100709166,LOC105019893,LOC103392195,LOC107668404 other downstream 535870 17514386 ~ 17521270 (-)
AMCG00001156 NA other downstream 869510 17126359 ~ 17187630 (-)
AMCG00001127 NA other downstream 2148014 15519616 ~ 15909126 (-)
AMCG00001118 hibch other downstream 2623671 15364067 ~ 15433469 (-)
AMCG00001193 NA other upstream 467067 18524733 ~ 18532689 (-)
AMCG00001196 RPL37A,rpl37a,zgc:171772,rl37a,LOC107564751,LOC107567628 other upstream 497569 18555235 ~ 18558217 (-)
G129566 NA other upstream 831099 18888765 ~ 18889757 (-)
AMCG00001251 NA other upstream 3182816 21240482 ~ 21270383 (-)
AMCG00001264 NA other upstream 3550171 21607837 ~ 21648508 (-)

Expression


Co-expression Network