G129394


Basic Information

Item Value
gene id G129394
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 18240456 ~ 18265272 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU162247
aacaaaccacacatggCTGTTTTCAGTGGAATCTCAGCTACACAGTGTCAGTTTGGGGCAACTGCATCCCATCATTTACATCTCTTCCTCAGGAATGTTCTCTCAGATAAGACAACCATGACCTCGAACCATTGCCTGGCAACCTTGTCTCCAGGCACAACAGCCGATGTGTGGTTGGGACTGATTGGACTCTGTGCACCTCTCGTATAACACTGTGACTGTATATTTGTGTTAGCTTGGGGAGCCGCCCTCTGAGAACGCTGTGGAGAGTGAGACTGCCTCGCTCTCTGGTTTTTTCCCAAAGCCGCTTGTGTATCCAAAATAAAGACTGCTTTTTGTACCTGAACTCCTGATCTGCCGTCTCATCCCTAAAAGAGTTCTTCAGTTTGGTTTATGCTTG

Function

GO: NA

KEGG:

id description
ko05164 Influenza A
ko05162 Measles
ko05168 Herpes simplex virus 1 infection

RNA

RNA id representative length rna type GC content exon number start site end site
TU162247 True 400 lncRNA 0.48 2 18240456 18265272

Neighbor

gene id symbol gene type direction distance location
AMCG00001185 vps8,LOC107699090,LOC107719737,LOC107710204 coding downstream 3676 18173883 ~ 18236780 (-)
AMCG00001179 tmem41a,LOC101174769 coding downstream 250840 17977837 ~ 17989616 (-)
AMCG00001176 NA coding downstream 383667 17806233 ~ 17856789 (-)
AMCG00001171 NA coding downstream 472004 17757078 ~ 17768452 (-)
AMCG00001172 NA coding downstream 510655 17728998 ~ 17729801 (-)
AMCG00001187 NA coding upstream 35561 18300833 ~ 18318933 (-)
AMCG00001194 NA coding upstream 242277 18507549 ~ 18517536 (-)
AMCG00001192 NA coding upstream 273723 18538995 ~ 18547799 (-)
AMCG00001198 LOC107581552,LOC107556299 coding upstream 283286 18548558 ~ 18553602 (-)
AMCG00001199 pfklb,pfkl,LOC108444469,LOC107675136,LOC108423917 coding upstream 299486 18564758 ~ 18588835 (-)
G129370 NA non-coding downstream 182790 18057140 ~ 18057666 (-)
G129358 NA non-coding downstream 263539 17972009 ~ 17976917 (-)
G129286 NA non-coding downstream 457807 17778916 ~ 17782649 (-)
G129273 NA non-coding downstream 478551 17710897 ~ 17761905 (-)
G129213 NA non-coding downstream 908775 17331460 ~ 17331681 (-)
G129437 NA non-coding upstream 144834 18410106 ~ 18412750 (-)
G129438 NA non-coding upstream 147582 18412854 ~ 18413433 (-)
G129440 NA non-coding upstream 148213 18413485 ~ 18415110 (-)
G129465 NA non-coding upstream 212345 18477617 ~ 18480956 (-)
G129567 NA non-coding upstream 624672 18889944 ~ 18890146 (-)
AMCG00001165 LOC100709166,LOC105019893,LOC103392195,LOC107668404 other downstream 719186 17514386 ~ 17521270 (-)
AMCG00001156 NA other downstream 1052826 17126359 ~ 17187630 (-)
AMCG00001127 NA other downstream 2331330 15519616 ~ 15909126 (-)
AMCG00001118 hibch other downstream 2806987 15364067 ~ 15433469 (-)
AMCG00001193 NA other upstream 259461 18524733 ~ 18532689 (-)
AMCG00001196 RPL37A,rpl37a,zgc:171772,rl37a,LOC107564751,LOC107567628 other upstream 289963 18555235 ~ 18558217 (-)
G129566 NA other upstream 623493 18888765 ~ 18889757 (-)
AMCG00001251 NA other upstream 2975210 21240482 ~ 21270383 (-)
AMCG00001264 NA other upstream 3342565 21607837 ~ 21648508 (-)

Expression


Co-expression Network