G129438


Basic Information

Item Value
gene id G129438
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 18412854 ~ 18413433 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU162303
tatatatacatatatatatatatatatacatataatatttaaaacgtAATGATCAAATTCAGGTTGCAACTTTGACATAACCATAAACTTTGAATAGTATCCGACACACTAATTAGAATCAGTACTTGAATGCAGGGAAGAAGATTGAGCAACAATGCGTGTAGAATGAATACACCCCCAACAGTCAATTTGTGCAACAGGCAGTAGCAGTCAATTGTGAAGATGTCTGATAGGAAAAACAAGCTACCTTATTGTATATGgagaagaaagcaaaaacatattaaCCACATTAAGACAAGCATATGTTATAAAAATAGGGATAAAATGGTAAGACAGATGTAGAGATATTATAAATTACTAGTTTCAGTGGCTTTTTAACAGAGCAGAGCCATAAACACAACAGTAACTACTGAAATTCCAACGAATACTTCAATTCTATTcttacaaaaattaaaagtttGGCCCAATATCTAGAGTGCTCCTAATGTTTGCAGTAAACAAAAGGTtaattttccttgtttttacaCATGACAGAAAAATGCTGATAGTTGAGTATTTCAGAGAACTATTTAATGCAtat

Function

NR:

description
PREDICTED: E3 ubiquitin-protein ligase arih1 isoform X1

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0030001 metal ion transport biological_process
GO:0006811 ion transport biological_process
GO:0006812 cation transport biological_process
GO:0006813 potassium ion transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU162303 True 580 lncRNA 0.31 1 18412854 18413433

Neighbor

gene id symbol gene type direction distance location
AMCG00001187 NA coding downstream 93921 18300833 ~ 18318933 (-)
AMCG00001185 vps8,LOC107699090,LOC107719737,LOC107710204 coding downstream 176074 18173883 ~ 18236780 (-)
AMCG00001179 tmem41a,LOC101174769 coding downstream 423238 17977837 ~ 17989616 (-)
AMCG00001176 NA coding downstream 556065 17806233 ~ 17856789 (-)
AMCG00001171 NA coding downstream 644402 17757078 ~ 17768452 (-)
AMCG00001194 NA coding upstream 94116 18507549 ~ 18517536 (-)
AMCG00001192 NA coding upstream 125562 18538995 ~ 18547799 (-)
AMCG00001198 LOC107581552,LOC107556299 coding upstream 135125 18548558 ~ 18553602 (-)
AMCG00001199 pfklb,pfkl,LOC108444469,LOC107675136,LOC108423917 coding upstream 151325 18564758 ~ 18588835 (-)
AMCG00001197 LOC107567712 coding upstream 177224 18590657 ~ 18608629 (-)
G129437 NA non-coding downstream 104 18410106 ~ 18412750 (-)
G129394 NA non-coding downstream 147582 18240456 ~ 18265272 (-)
G129370 NA non-coding downstream 355188 18057140 ~ 18057666 (-)
G129358 NA non-coding downstream 435937 17972009 ~ 17976917 (-)
G129286 NA non-coding downstream 630205 17778916 ~ 17782649 (-)
G129440 NA non-coding upstream 52 18413485 ~ 18415110 (-)
G129465 NA non-coding upstream 64184 18477617 ~ 18480956 (-)
G129567 NA non-coding upstream 476511 18889944 ~ 18890146 (-)
G129571 NA non-coding upstream 487078 18900511 ~ 18903646 (-)
G129573 NA non-coding upstream 493711 18907144 ~ 18907641 (-)
AMCG00001165 LOC100709166,LOC105019893,LOC103392195,LOC107668404 other downstream 891584 17514386 ~ 17521270 (-)
AMCG00001156 NA other downstream 1225224 17126359 ~ 17187630 (-)
AMCG00001127 NA other downstream 2503728 15519616 ~ 15909126 (-)
AMCG00001118 hibch other downstream 2979385 15364067 ~ 15433469 (-)
AMCG00001193 NA other upstream 111300 18524733 ~ 18532689 (-)
AMCG00001196 RPL37A,rpl37a,zgc:171772,rl37a,LOC107564751,LOC107567628 other upstream 141802 18555235 ~ 18558217 (-)
G129566 NA other upstream 475332 18888765 ~ 18889757 (-)
AMCG00001251 NA other upstream 2827049 21240482 ~ 21270383 (-)
AMCG00001264 NA other upstream 3194404 21607837 ~ 21648508 (-)

Expression


Co-expression Network