G130055


Basic Information

Item Value
gene id G130055
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 22079082 ~ 22082918 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU163046
acttaCAACTTTCCTCAAGATGTTTTCCCCGTATCGGTCTGAGAACTGGGTGTGTGTGGATGGCAAGGAGACATCTACATCACCTGTAGGTCTGCGGCAGTTCTCACAGCGCCAGCCCTGCAGGGGGAAGATTTCCACACAATGAAACGCCCTCTATATACTCCCCATATTAACACTGCACAGGCATGGGGAATAACTGGGAAATTCAGTTTTCTGTGGCTGTTTACTCCCAATACACCAATACTGATTTGCATGTCAAACAGTGAAAAAGATTAACAAAGACCAGGAGACATTTATGACCtccaaaaagcattttaaagacCTTTAGATGGGACTTCAGCATCAGAACATGCCTGAGAAAGTGGGGTTGCTGATTGGCAGTTCACTATGAGCCAGGGAAGGGCAGCACCACACAGTGCTACACAAAAGGAGCAGAAGAGTGACCTTACCTGCTGTCCACCGAAGCAAGTGCAGGTGCAGATAGCTCCCAGATACTCCTTCTGCCACTGCTGTCCTACCTGGTACATCTTCCCTTCATCATAGCAGGTAGCCTCATCTATACAGATATTAAAAAGTGATTGATAGGAATGATTTTAGTCAGGATTTCTTAATGAAGAATATAATTAAAGCAAGCTTGAATTTACAGAATCcctttgtaaaaatgtttacCTGCAGTAAACATGCTGCTCTGCTTTTTTAATCTCAAAGTTCAGAAAGACcatcaaaaacaagaacattgaGGTTTCAATTACCATAACTTCAGAAAAACTAAGGACAATGCCTCAACTTTtactaacaaaatatatttaactattGTCCTGCAAGAAATGGCATGTTAGACAAATTAATGGGTTAGAATTAATTCAGGGTATGTGTTCCAGTCATACAATTATCATTACAGCTTTAGAAAGGCTCAAAAAGCTTGAttgtaacaatatttttaaagtcagaattacttaattgatatGATATTCATTAATATAGTTGACTGTTGTGCTCTCGGTCTCTTAATTCAAAACAACTCCGAGTCCCTGCCATCAGTTTTGTTTGGGTTCTCAGGTAAATTACGCTTTAATTCAGGTCGAGAATGGAATAAAACGTGTGTAACACTTACGAGGTTCGCACTTGAACTCTCCTTTGCCATTGCCCAGACACGTGCAGCTCATCATGTGTCCGTTCTCTGCCTGACGGTCCCATTTCTCACCAATCCTGTAGTTGTTGCTGTTGTCGTGACACCATGGATGAATCACATCTGAAATGACCACTGCCAAAGCCCAAGCAAGTGCACCACAGCTTAAAGCCGGTCTCGGACATGCGCTCCCACTCGGACCCGACTTCGTGGTACGTTGCAGTGAAAGTGTCATAGCACATGTCTTTTGCAGGAGCTCCATCTGAAAATGGGAAAggtcaaaagaaaaataattgcattagtCAGTGCAGTGCTTTCAAAAGTGTAGTTTTCAAGTCCATTCACAAGACTGATAATTGTTGGCCAAATTCATGTCTGTTTTATATGCATCAACACTTACAATCATGTCCACAACATCCATATTCTACCCATTTGATATTACAGGAGATATTTTGCATCCTGGATTCAGAAATTTAAGTAGCTCTTTCCAACATTGATCTCCTGAAACCTTGCTGGATTCAACACAGGGACAACTTGGTCTTAACCCCATTTCACACAAGCATCAGGTCACCCAAAAGAAAACTTATTTTGCTTGTTGACAAGTAACATGTACTTCTCTATAAATCTGAAtcttctaaaacaaataattcccAAGACAGAACATTTTCCAATGCCTCCAGGTTGAACAGAGCCTGCACAATGTTGGCATGAAAAGGGCATAAAAGTACAGCACCTTTGGAGTTAAGATGGTAACATAGTCAAGCATTTCTGCTCCTACCAGTATTTTGTACTGTGATGATCTCCTCTAAAACCTTCTGCTTCAACGCTCCTTTCAAGGCCTCAACGATGACGTTGTAGGAAGCTCCAGATGTGAGGCCAGTTAGGGTAGCGCTGGTGGCAGTTCCTGGCACACGGAactaaggaaacaaaaaatgaaaccacttgaaattgttaaaatatatcattgtTTCTGACTGGGCATAATGCTAATGCAGCCTTTGAAACAGAATAGCAGAATCCTTCCACAATCGTACATTCCCGTTCTCCATAGTAGAACCCTGTGTGGCCGCAACATAGGGGCAGAGGCAGGCCTGTTTGGAGTGGAACGGCTTGACCGGCAACACTCATAGTCAGCTGGGAAGTAACAGCACGTCCCTAAAATCTCGCCACCTCTTCAATCAAAagatcaataataaaacaaatccacatgcagttttaaaaatataaattttaattGAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU163046 True 2368 lncRNA 0.41 2 22079082 22082918

Neighbor

gene id symbol gene type direction distance location
AMCG00001262 NA coding downstream 118698 21953204 ~ 21960384 (-)
AMCG00001263 pard3bb,LOC107596552 coding downstream 367163 21707427 ~ 21711919 (-)
AMCG00001261 pard3bb,LOC107716778,LOC107688750 coding downstream 384111 21686709 ~ 21694971 (-)
AMCG00001258 NA coding downstream 525007 21553734 ~ 21554075 (-)
AMCG00001257 NA coding downstream 579406 21434440 ~ 21499676 (-)
AMCG00001266 atic,pur9,LOC106575709 coding upstream 3073 22085991 ~ 22103093 (-)
AMCG00001267 NA coding upstream 53901 22136819 ~ 22143335 (-)
AMCG00001273 map3k2,LOC102792173,LOC107706666 coding upstream 388308 22471226 ~ 22497944 (-)
AMCG00001281 NA coding upstream 698973 22781891 ~ 22784507 (-)
AMCG00001280 NA coding upstream 721356 22804274 ~ 22823565 (-)
G129951 NA non-coding downstream 745083 21333526 ~ 21333999 (-)
G129927 NA non-coding downstream 839058 21237474 ~ 21240024 (-)
G129878 NA non-coding downstream 1001052 21077742 ~ 21078030 (-)
G129844 LOC107575789 non-coding downstream 1136633 20942057 ~ 20942449 (-)
G129807 NA non-coding downstream 1233143 20845696 ~ 20845939 (-)
G130101 NA non-coding upstream 150244 22233162 ~ 22233765 (-)
G130105 NA non-coding upstream 170833 22253751 ~ 22254154 (-)
G130215 NA non-coding upstream 420033 22502951 ~ 22515412 (-)
G130251 NA non-coding upstream 571999 22654917 ~ 22741107 (-)
G130276 NA non-coding upstream 713716 22796634 ~ 22823118 (-)
G130004 NA other downstream 256262 21789208 ~ 21822820 (-)
AMCG00001264 NA other downstream 430574 21607837 ~ 21648508 (-)
AMCG00001251 NA other downstream 808699 21240482 ~ 21270383 (-)
G129566 NA other downstream 3189325 18888765 ~ 18889757 (-)
AMCG00001196 RPL37A,rpl37a,zgc:171772,rl37a,LOC107564751,LOC107567628 other downstream 3520865 18555235 ~ 18558217 (-)
AMCG00001268 NA other upstream 119128 22202046 ~ 22220416 (-)
AMCG00001270 NA other upstream 176525 22259443 ~ 22302448 (-)
AMCG00001274 NA other upstream 368668 22451586 ~ 22464876 (-)
G130244 NA other upstream 524224 22607142 ~ 22614286 (-)
AMCG00001291 NA other upstream 1426913 23509831 ~ 23555714 (-)

Expression


Co-expression Network