G130482


Basic Information

Item Value
gene id G130482
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 23745753 ~ 23751110 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU163533
CAAAAACAAAGATCAATTTTTGTCACACTATATACAGATATTACATACAGTGTTTATACACATATTACATAATTTgtacacaagaaaaatatacataaaaatgtaaacttttgtatacaaaaaataccttaaacaaattaaacaaggaCCAATAACAAAAGGTGACTAGATCTTTATTAGCTCAtcctattatttaaaaaacagtaatacaGTACATTCAATGAGTATAGGAATTTGTAAGCCACCTTTCTTATATTTAAGCAGTTACAAGTGCCTACAAAGCTTCTTTCCCtgctacatatttaaaatatatatgaagggTTGGTGGGAGTgggattacatttatattactgAATCTGTGCTTCCATGCAGGTGTTTTAGACTGGtatagaataataatttaagaaaaaatgcccagcatggaaaaaaaaacaggggaaATACCAGAGCTCCTGCACATTCTCTGAAGAGTTTATATTATAATGAGACATAAAGCTGTGGTCAGATTTAGCCGAATTACACAAATGCAGAAAAGTAAATGGATATATTTGGATCTTATAGTTGAAAAGGTCTAGGAGTTTCAACAATGATATAAATACTTGAAGATATTTCAGAGAATGTCATTCTTCAAATCCACTGTTCTCTACACTGAAGGTGGACCCTACATTTACAGTTCCATAATGCTGAGTAAAGACACCATACCAGTATGTAATTGCACCTTCAACAAGGGCTTCAAGACTCCAATCTGTATATAGAAATAGTTTTACTTTACTAAAAATCTAGGTTTTCATTCAGTATTTCTGCATAACATGATATATATTGAAACTCTCTGTTCATCCTGTTTAATGATCTTTCAAAAGTTCAATCATTGAAAGACATGAGTATATCTGCTAGTGGAACATACTGGGAGACATCTTACACAAAACTCTGATTAATGAAGTGAGTATGCCGGCACTCTTGTTGCCTAAAGCCATTGTTCATGTTTCAGAAGTGAGGAGCACTGCAGTAAGGTGCAGCCAGAATTGTATAGAAGATTCAAAAAGGCACAAGACTTTAGCCTTTAGGTATTGGATTAACATATACAGCATACAATTAAGTCATTATTTCTCAGCAATCCAAAAtaaatgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtggggggggcgggtggTAGTACGTATCAAACACTAGTTGatcatataaaaaacaaacaaaacaaaaaaatagtgCAATTTTTAGCAAACAATTTTATCATGTGCCCATACACAGGACCAGTGATGTGACTTTGCCACAACTGACAAGTTATTGCAGTAGTGACAGTTGTTCAAGCAGAGGGAAAGCAAAAGCTCTCTGTTTGAGTACAGAGTATTTACAAGTCTTCCTGTGGTGTTAAGGCGAAATAAATAAGTATCCTGACCACTCTCTAAAGAAAACAAGATGGAAATAGACGGGCAAAAAGTATTGTGATTAATGATAACAAAACAGATAATAAGTTAGTTTGTAAGCGAACAACATTAATGTGTCTATCCTACTGTTCTGCTTCTCACTGcttgtacttttttgtattGGGGTTGTGCTGGGCGCTGCTTAAAATTTGAGTCAATACTGTTCTTCCCAAAGAAAGGTAAGCATGGCAGCACAGACCAACTAGACAAGCAAAGAAAAGGGAGGGAGATTTCCCTGTGTCCCATTGTGATCCCCTCCGCCCTGGCCTTAATTTGGTAGAATTTAATAGctatcaaaaatacaatacataaaacattcatacacAATCACAGCCTTTTCTTTGATGAACCAGTTgaacaaaattgtaaaaaaaaaataaaaaaaaaaattacacaatcTATGGCATCCTTTAAATTTGTCAACAGAAGACAACTATTACCTCACAACATGTTTTGATAGCTATTAATATTGGGGATACATTTTtccatgaaaatgaataaaacaaaaaacattggctccattaagtacattttgcagatgataaaaaaaataggtcagattttttttttttttttttaaattagaagcaggaaaggaagttatgcatttttttctatgaGACAATATTCTTGGCTTCACTGGTTTTCGTGATGTAGTCCTACTTAATCTAAATCATTTTCCTTACAGGGACATTGCACTTTCCTTTTATGTTCCCTTCAAGGCCACTGGTTGTATAGATTCCATAAAGCACCATAATGAGGATTGTACACATTTTGAACCCTATTGTTTGGCTGTTGATTTTTACTGGGGCATATGACATTAGTAACATGTTTGGGCTATCCctgaaaataatgcaaactGTTGTTCTTTTGCTTCTGTTGTGATACGCATTTCACATAAAAGGGATTTACCGGAAATAAGAAGATCCATTGTGTATATTTAACAGACAGCCCAAAACATGTTCCTCATCTACTTTCTTCTATTTATCAGAAAACAGTCTGCATTTTAGGCTTTTTGTGTAGacttaatacaattttgttgtCCACTTTTGTatggaacaaaatacaaaaaagtatgtTAAAATACTATgcaaggaaaatatataatcgGTGAAAGTTTATTGCTTAAAGAAACCAGATTTATTGTAATGTGAGGCCCTGCATCAGTCCTGCTATAGCAATGGTGCACAAACAAGAGATCTAAGATCAATTTTTGCTTCTTTTGTCCTGGAGTTGGTCAATACatggtttaatatttacaatataaaaactactgctgatttaaaaataaaaataaataaatggtgtgaCAATATCTACATTTTGAATACATACTAGAGaaaaagggagaggaaaaaaaaaaaactattctccTTCATAGTGTGAAATTGTGTACATAGATAATGGGCCACACATATTGCATGTTATTCAGCTTATGTCTAGTGCAATGGATGCAACTGTAGGAAAAAAGATATCATCTACAAACAATTTGAAATACTGTAACTGAAACACACAATCTTTCAATATCCCTTGATCTCTTAAAATTTTGAAAGACACGCACACAAATGCTTCATTCTCAAATGCAAAAGTCACATTTCACAATCTCCTACATTTCTGATACAATGCCAGCtacttttacaataataatgataatgcaatttaatattCAAGATTTAAGGTCTGCTATCAGTTTTGCTGCATATAAACCTAGAGGTgtgaagattaaaaataaaattttattGCAGTGCATCTAGATATGTTTGCAGCCTGCAGTTCTGTCTCTTTAAATGGTTCTCTTTATTAGAAGGTATACATTTTCCTGCAGGGATTTTGAtcagaaatgtgtaaatgcTTCAACAGCACTAATTTGCCAAAATATACAAGAaattcattatttcacattcatattcCCAAATGGTCTGCACAATGCAACATGTTGGAAAAACATCCAAGCTGTAGGATACAGTATTTCATAACTAGTTTTAATGTGAGGCTTTTAACCTTGACACAGTTAGCACCCATGAGACTGACATTAACTGTAAAACAATACGACTTCTGCAAATTGTCAGTTTTGTTAATTCAATATTGTTAATCTTATAGGACTGTTTCTTGATAAATACAGGTACCTTTTtcaccttcttcttcttcttcttaaggAGAACAACCATATATTGCTCCCCAGCAGTGTTTGCTTCCAAGCTTTGCACTGTGACAACCCTCCTTCAATCCATATAGGATTGCAGTGCTTGAGTTTCAAACAAATCTAAAAGGTGGACTCACATGTATGTTGACAGACAGCATGCCgttaatttcagttttagaTTATCTGGATTAGCTGCTTACCCTTTATCATAAAAAGCAGCCCCTTTGAAAGAATCAACAGGcagttttcttaaaatatataagctGATATTTAGAAACTGGGGGCTTCCAGTTTCTAGCTGATCTATGAgccttaaataaaaataaaaacacagccatGCACAGTTGTGGTTGAAAGTATTCAGACTCTTCATTTGAAAGTTATTCAGTGATTCACTGAGTGTAAATCAATATtgttctttaaattatatttatcaattgcACTCTcaagagtttgttgaacactgactGGGCCAtgagaaaatgttaaagtaGGGATGTCAAAATCCAGTACTGGAGGGcttctggattttgttccagcaCAGCTCGAAATTCCTTAAGGTCTATTTAAATGATTGAGTGGATGAATTGAAcacttttctaaatgttttgtgGGTACAATATCTGGAGTAATCACCATATTTTAAGTTAtcagctgtaaaaaaataataaataataatttgagtaATGTTGGGACAAGAGCCAGGTGAGACTGCAACCCTCAAGGATCAGTTTGAAGCCCCTACTGTAAAGTTTCCAGCAAATTGAACTGAGCCAAGACATTGGGTGTGTAAACTATGGTCTGCATCTTTCTCTGTCCCAAATTAAATCACTGAATAATGTGTGCTAACATTTTCAGATacatctgtatgtatatgtcaCGTCTTTAACGAATTGTGGATTTTTAAACTATGTCACACTAATCTTAGATGCTATAGGAAGCTCCTGGTATAATACTAAATATATCATTATCCAATATAATTTTGTGACTAATTTTCAATaaatgaaacacaacacaggccCAAACTAAGTCAGGCATTCAAACACCAAACATTAAATTACCTTCCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU163533 True 4663 lncRNA 0.34 2 23745753 23751110

Neighbor

gene id symbol gene type direction distance location
AMCG00001293 eef1b2,eef1d coding downstream 124831 23616471 ~ 23620922 (-)
AMCG00001290 NA coding downstream 346772 23342817 ~ 23398981 (-)
AMCG00001289 NA coding downstream 477802 23247525 ~ 23267951 (-)
AMCG00001287 NA coding downstream 556806 23176343 ~ 23188947 (-)
AMCG00001288 NA coding downstream 583028 23122004 ~ 23162725 (-)
AMCG00001295 NA coding upstream 115511 23866621 ~ 23884688 (-)
AMCG00001296 NA coding upstream 363190 24114300 ~ 24142020 (-)
AMCG00001301 NA coding upstream 603979 24355089 ~ 24365595 (-)
AMCG00001304 NA coding upstream 623565 24374675 ~ 24375851 (-)
AMCG00001308 NA coding upstream 624794 24375904 ~ 24382811 (-)
G130480 NA non-coding downstream 6493 23738979 ~ 23739260 (-)
G130479 NA non-coding downstream 7315 23738136 ~ 23738438 (-)
G130478 NA non-coding downstream 8775 23736680 ~ 23736978 (-)
G130477 NA non-coding downstream 9161 23736234 ~ 23736592 (-)
G130476 NA non-coding downstream 10843 23734686 ~ 23734910 (-)
G130483 NA non-coding upstream 19299 23770409 ~ 23770863 (-)
G130528 NA non-coding upstream 165883 23916993 ~ 23917218 (-)
G130574 NA non-coding upstream 439889 24190999 ~ 24194404 (-)
G130591 NA non-coding upstream 579140 24330250 ~ 24354241 (-)
G130633 NA non-coding upstream 825864 24576974 ~ 24578958 (-)
G130470 NA other downstream 20474 23723392 ~ 23725279 (-)
AMCG00001291 NA other downstream 190039 23509831 ~ 23555714 (-)
G130244 NA other downstream 1131467 22607142 ~ 22614286 (-)
AMCG00001274 NA other downstream 1280877 22451586 ~ 22464876 (-)
AMCG00001270 NA other downstream 1443305 22259443 ~ 22302448 (-)
AMCG00001306 NA other upstream 643416 24394526 ~ 24400546 (-)
AMCG00001303 NA other upstream 653677 24404787 ~ 24419606 (-)
G130622 si:ch211-114n24.6,tuba4a,LOC107387629,LOC107659949,LOC108255233,LOC107659977,LOC107678212 other upstream 683979 24435089 ~ 24439649 (-)
AMCG00001316 cfap65 other upstream 846459 24597569 ~ 24685570 (-)
G130667 LOC106958509,LOC106963510,LOC107690788,LOC107671222,LOC107579420 other upstream 1075183 24826293 ~ 24836873 (-)

Expression


Co-expression Network