AMCG00001400


Basic Information

Item Value
gene id AMCG00001400
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 2076753 ~ 2104545 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001400
atgaaaaccaaaagacCCTTTAGCTCTGAATTGCAGGCACTGACAGCTGAGCTGAAGAGTGGGCTGATGGGGGCCATGCAGGCTCTGTCCAGCCTGCAGCACAGAGATGATAGCCTGGATGAGCAGGTGATGACCTACCAGAGCCAACTGGATGACAAACTTCTGGGAATACGGAACACCTTAAACAGCTTCAAGGAGGAGCTGAGCACTGCCTTGTTCCAAATTAAAGAGATCAATGGCAGGCACAAGGAGATGCAAAAAGCTCTGGACATCTTTCAGATGGAAGTGAACCTTCTCTCCAGTCAACAAAGAAAGGGCTACAAAGAAGGCCTCTTACCTGATAGCCACCGATGTCTACAGAGCCAGACGGAACTCAATGTGATCCAGCACTATTTTGCAAGTCTGTCCAACAGTTCATCTCCTAAAGGTAAGAGACAGAGTGCTGCATTGGAGCTCTTGGAATCTGAGAGAGTCTATGTGTCCTACTTATCTTTACTGCTGAAGGCCAACATCACCTTTAATGGATCTGAAGCCATGCACATCAAAGACAAGAGgCCTTTCCCCAGTTCCCTGCGCTTCCTCATTCAGCAGCACCTGGAGCTGCTTCACGTCCTGCAAGATAGAGTCCTGAAATGCCAGTGGCAAGGCATCATGGGAGATGTGTTTATGAAGCTGACAAGCAAAGAGGGGGATGCCACTGGGGATGAGCATTGGCCTTCCCTGCATGCACTGCTTCTTCAGCCAGTGCAGCGGATCCCAGAATATCTGCTGCTGCTACAGAATCTGTTGAAGCACACGGTGCCAGAGCATCCAGATTACTACCTGTTACTGATCTGTATCCAGCAGTTCCAGGCCTTCACCTTGCAGTGCACTCCACTGCTGCAGCACAATGAAGAGCTGCTCCAACACAACAGGAAAGAGCTCAAGAGGTCTTCCTTGAAACAACTCTTCAAGACAGTGGACTGCGGCCCTCAGCCTGATGAGCTGGAGTCCTCCTTCTCTCCCAGCTCTGCCTTGCTCAAACAGAAGCTACTGGAGCAAATGCAGTGCAAGAAGTACCAAGACTGGGAGGACGAGCCACAGAGGTTTGACTTAGTGGATGGCGACAACCAGGGTGCCTTCTTCAGCCCTGACACAGAGCTGCGACTGAAGCCCCAAGCTCTGCAGAGCATACCTGAAACTGAGCAGGAGGGAGGCTCTCTGGAGCACCAGCCCTGCAAGAGGTCGACCCTGCACAGCACCCTGGGAGAGCAACTGGGGGAGTTTCTGCTGCCTGGGGAAGCACTTAGTATGGAGGGGGTTTACAAGGATGCTGATTCCCTCCACAATGCATTGCTCTTTGACAACTGCTCCACCGCCTCTTCCGACTCCAGCATCGACATTGCCTTTGTCCGCTGCCCAAAGAGCCATGCAGCTGAGGCCTGCACAGACAGCTTCAATCTCTCAAGCCGACGGTGGGCCTCACCTGAAGAATTGGCTCTACGGCGGTGCCGCCCCCTGCAGGCCATCCAGAGGAAGAGCAAATCCCTCAATGGCCTCCAGCTGGACAGCCCTGTTAGCAACGATATTCTCCTGGGTGTCGCAGCCCACAGCAAAAGCACTGTGTGCCAGAGCCCGCTGAGTGGTGGGGGCAGCCAGCATGCTAAGTTGGAGTGCCAATCCAGCAAGGGCTCAGCAGGATGCAAAGCTCAGAGGAGTATAAGCCCGCTGCAGAAACCAGAGGCTGAGGGCCGAACTAGTTCTGAAGAAGACGGTTTGAGGAGAGACCATGAGAAGGAGCCTGCGGGCCATTCATGGGGTGGTGAGGAGGCGAGGTGGAAGAGGGGTGGCGAGGAGAACAGCCAGGCCTCCTTCAGCGAGAGCAACAGGAAGCAGGACCAGAAAGGAGGGTTCAGGAGTTCCTTCCGCAAACTCTTCAAAAAAAAGTCTGGTGGCTCTGACAGTAAAGACAAGTCGAGTGAGAAATCAACATTGGATCACTCTGCCTTCAGTGACAAGGAGCTGCTGAAGATACCACGAAGCTCTCGTATGGGAGAGATCGAAAGAGGAACAGCGGTGTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001400 True 2061 mRNA 0.53 12 2076753 2104545

Neighbor

gene id symbol gene type direction distance location
AMCG00001399 NA coding upstream 17756 2056887 ~ 2058997 (+)
AMCG00001395 NA coding upstream 54613 2020323 ~ 2022140 (+)
AMCG00001394 NA coding upstream 183055 1722432 ~ 1893698 (+)
AMCG00001393 NA coding upstream 409050 1655576 ~ 1667703 (+)
AMCG00001388 NA coding upstream 438841 1632813 ~ 1637912 (+)
AMCG00001407 NA coding downstream 107706 2212251 ~ 2218503 (+)
AMCG00001403 tmem178,LOC107691291,LOC105026821,LOC107751123,LOC107570655,LOC106564792 coding downstream 275699 2380244 ~ 2393334 (+)
AMCG00001406 NA coding downstream 513691 2618236 ~ 2657002 (+)
AMCG00001410 NA coding downstream 817427 2921972 ~ 2922279 (+)
AMCG00001415 NA coding downstream 1314859 3419404 ~ 3420432 (+)
G157373 NA non-coding upstream 65286 2007320 ~ 2011467 (+)
G157361 NA non-coding upstream 179473 1897074 ~ 1897280 (+)
G157336 NA non-coding upstream 285226 1789391 ~ 1791527 (+)
G157327 NA non-coding upstream 364938 1708945 ~ 1711815 (+)
G157256 NA non-coding upstream 972237 1101909 ~ 1104516 (+)
G157461 LOC100846954 non-coding downstream 310971 2415516 ~ 2415966 (+)
G157473 NA non-coding downstream 401031 2505576 ~ 2505911 (+)
G157475 NA non-coding downstream 406691 2511236 ~ 2511757 (+)
G157477 NA non-coding downstream 413077 2517622 ~ 2517991 (+)
G157481 NA non-coding downstream 440318 2544863 ~ 2545145 (+)
G157369 NA other upstream 75825 1971881 ~ 2000928 (+)
AMCG00001392 NA other upstream 381767 1691676 ~ 1694986 (+)
G157196 NA other upstream 1487453 587975 ~ 589300 (+)
AMCG00001436 gng4 other downstream 1644009 3748554 ~ 3765362 (+)
G157781 NA other downstream 1770664 3875209 ~ 3880779 (+)
AMCG00001433 NA other downstream 1918252 4022797 ~ 4023910 (+)
AMCG00001430 srf other downstream 1940811 4045356 ~ 4062333 (+)
AMCG00001457 NA other downstream 2518922 4623467 ~ 4652000 (+)

Expression


Co-expression Network