AMCG00001421 (ero1b)


Basic Information

Item Value
gene id AMCG00001421
gene name ero1b
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 3564520 ~ 3587440 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001421
ATGCGTGAGGGAAAGTGCATTTATAGCACGGAAAAGCTACGGTTCAGTATTCAGTCCAAACTTTCAATACTCGGCATCCTCAGCAGTGGAGACGAGGGTACTGCGTTACCCAGCGGCGGTATGGTCGGTGCCCACCTCTACGCCGCGCTGGCATGGCTGATCTCAGCCCCGTTTTTCGGAGAGTTCAGATCGGAGCTGACTGGGGTGTTGGACGACTGCTTCTGTGACATCGAGAGCATTGACGTCTTCAACAACTTCAAGATTTATCCTAGGATCCAAAAACTGACCGGGAAAGACTTCTTCAGATACTACAAAGTTAACTTGAAGCGTCCTTGTCCCTTCTGGCCAGATGACAGCCAGTGTTCAATCAAGGACTGCCAGGTGGAGCCCTGCCCTGAGAGCAAGGTTCCAGTGGGAATTAAAGCTGGCAACTATAATAAATATTCCCAGGCTGTGAATACAATGCAAGTCATGGAAGACTGTGAGCAGGCCAATGAACTTGGAGCCATTAATAGCACTTTAAGGCACGATGACGCTCAGGACCATTTCTGTGAACTCGACGATGAAACCTCACCTGATGCAGAGTATGTGGACCTGCTGCTAAACCCTGAACGTTACACTGGGTACAAGGGTCCGTCTGCTTGGAGGGTCTGGAACAGCATCTATGAAGAAAACTGCTTCAAGCCACGCTCTGTGTATCGCCCCTTAAATCCACTGGCTCCAAGCAGAGgaGATGATGACGGTGAAGGCTTTTATAATTGGCTGGAAGGCCTCTGTCTGGAGAAAAGGGTTTTCTATAGATTGATCTCAGGGCTGCACTCCAGTATCAACATCCACCTCTGTGCAAAATATCTTCTCGAAGAGGCCTGGGGGAAGACTAAGTGGGGACCGAATGTCAAGGAGTTCCGCCACCGCTTCGACCCGGCTGAAACCAAGGGGGAGGGGACCAGGAGGCTGAAGAACCTCTACTTCCTGTACCTGATTGAGCTCAGGGCACTGTCCAAAGTGGCTCCGTACTTTGACCGATCCATCGTGAACCTGTACACTGGAAACACAGAGGAAGACGCAGCCACAAAGGACCTGCTCCTACAAGTCCTCAATGAGACTAAAGCATTCCCCATGCACTTTGATGAAAAATCCATGTTTGCAGGACACAAAGTCGAAGCAAAAACATTGAAGGAAGAATTCCGGCTTCATTTCAAGAACATCTCTCGTATAATGGACTGTGTGGGCTGCAGTAAGTGTCGACTTTGGGGAAAGCTGCAGACCCAGGGACTGGGCACTGCTCTGAAGATCTTGTTTTCcgaaaaagaaattaaaaacctgCCCGAGAACAGCCCGTCCAAAGGTTTCCAGCTGACCCGGCAGGAGATAGTCGCTCTTCTAAATGCATTCGGAAGGCTTTCGACAAGCATAAAAGAACTTCATAATTTCCGAGTGCTCCTGCAGGATTACAGGTAACGAATATCCCCAGCCACACGTCGTGGCTCTCGCCCAGTGGACACTCGATCACTCTGGGCTTCCCCCAGGGAGAGACTGCTACATCAGGGACTACAGGAGCAATGCCTGGATATTCatgaaagagagaaatacaaatgtctaCACCTTTTCTTACACTCGAATCCCCAAAACTTTCAAGAATCAAGacgtgggggcgggggggaagCAAACAACCAAAAAGGTTCAGCTTTAGCTTCTAGGCACTTCTAGGCTTATTGAAAACTGGCCCAATCATGTTTCCTTGATTTCAAAAGGATACTCTACTGTCTCTATTTATTTGTCCCTTTTACTGATTCTAACTTCCTGGTTGTGGACCCATGAATATTTGCGGTTTCCTAAACACACAGGTCACttttatacatgtgtttttgtctcttCAATGTCAGCTGAAGTGGTGGTATTTGCAGTGGAACTTGCAGATCAAaaaactgcattgcattgctCGGACCAGTCTGTGATCAGAAAATGGCAATGGCCGCTTTCCTTAATCACGCTGCAATATATCTCAATGGAGGcagaacaatttaaaatagtCGATGTGAGGGTGCAGTAAGTGaataagatgttttatttatttttttgttcatggAAATGGTTCCTGAAATGACGGTGGATGCATTTCTGTGATGTAATGTCAGGGTTGTGAGAGAGTGATTTTGATATTGTGAAACTTCTGTATGATCTCAGACTTATATGAACTTGATCAACGGACACAAACATTGGGGTTTTGGGGTTTCTGTTATCAGAATGGTATTAAGTAACAGATTGCCACAGTCAATGCAAAGTATGATGGGAAGGGGCTCTTTTGTCACTGGtcaccttaaaaaaattattatattaatatttctatgtATAATTGTGGTTAAAAACTGTTGTAATTGTAATAGCATTTAGgatgatgatgacaataataatagtaattaaactTCCAACAATAAGGATACCAAAATACAGGCCAGGTCCTCAGCCTATCTGCACAATTACCAAACCCACAATTACCTTCAAAATCCAGTCCAGCAGTATATTGATCTAGATCTCTGCCTCAGCCGTCCGCAGTTCCTTCAGCATCACTGCTGTACGAGGCGGTCTTGCTTGAGAGAGCCCAAAGACAAGGCTGTTATGAAAGTGATTTTCCTCAAGCAGTGAGTGAGTCCATTTGCACTTGACCCTGTCAGACCCTGTATACGCCAGCCAGTCAGGAAGCTGGCACTCGAGTTGTTCTTGACTGCAGGGATTTTCTAATGCTGGTTTAGGCCCCTTCCATCACAAAGCAAGATGAAGAAGCCATCCAAAACACAGGCCATGGACAAATACTGAACACTAGAGGAAGCAAATGGGAGAGAGCTGGCATGTTTGCATCCAGTTGCACAGACTGGTGCGGTCTTAATGAAGCTGCTGGCTCCAGTAACGTGCAGCACTGGACCTCTAAAGACTATGGTCAGATTgccagtattaaaaataataataataataaaaataataataatgttttttgctGCCTCTGATGCCAAGGACAGAAAGTAAGAATCTTATTGTAAAGCAGTTTGatgtatttcagatttaattaactGCGTATCTGAATAGATAACTTACACACATCCTTATATCTTACACCGATATATTTATTCAGCCTGCATCCAGGAAATCCGCCACTTAAGACCTGGATTTGGATTGAATAAATCGATCTGCAAAGTGTATTAGGGAAGTTGTCTCCTTTGtacattgatacattttttgttttactcggTGCCGTACGCAAGACTTTGGAATGCATATGCTCTGTTTTTTGGTTATGAAAGTAAGTAACAACCACAAAATATTCAGAATCTGCCGTTGAAATCCGGATCCTGCAGCTTAACAAACCTGCGATGGGTCAAACTGCTGTGAAAGTCTTCtttctaaacccatgttgagtTCTCGCAAGAGCTCTCTGCATAATAATAAGGGTGGGTCTAGCTTGTGTAGGACCACTCTTCTGCTTTACGTTTCTATTTTAGATGGTTTATTTCCAGATTTGTGTTGCAGATCTGGAACTGAAATACAGAAGGCAAATGCAACCAATCTAATAATTGCTGCCGTCTCTGACTGTCCGTTTTAATTGGTTGAGGGTTAAATTGCATTAATTCCTATCTATGTACTACATTCTAGTGTTGGGCATAggaatataatacatattgggTTAATCATTAATCTGTGAGGTCTCCCTAAAAGCTGAAGATTAAACCAAAACATGCCTTCACAATGCTTGCCAACGGGGAATGGATTgggaaaaatactttatttatcaGTCTACCTGTGATCGATCGTTAGAGTCTCAATACTTAAGCCATTTTATGGAGCAATGTATTGGCCATTGCAATAATTGTCATCAGAAAAAGCCCTTTCCTAGGAGTCCCACGTTCCACAGGATACTTGTGCTGCCTTCAACCTTCTAGTGCCAATGGTAATTATactttgtctgtgtttctgctTCTTTTAGACTCTTTTCACACCTTTATTGTTGCAAAGCCAGAATCAAAGGCACTTGTGAGATTAATACAACAAACTGCAGTGCTACATTCCTTCTTCATGTATGAAATGCATGACCCTAATGGCACAAGCGCTGCCTGTGCAAGCCACTGTCTGCCTTAAACTAaagtctaataataatacaaaaaaaaaagtgaaagcttGCTCACATTGACAAAGttgattgtaaaaaaaaaaaaaagagaacctCAGTTGTCTCTGCTTTCTGTTATTCCCTTGCCCCTTTGCTTTTCGACTGTTCTCTCCCACTCTTTTACCGCTTTCAGAGAAGGAATTCAGACCTTTTTTCAGGAGCTGAAacgtgtatataaatatacttgCACCTATTCTGTCGTGTATACTCGTcgagtgtatttgttttgcggAGAGGAATAAATCTTGTTGTCAAGCATAATGGGGTGTCCGATTTCTTCACAACCTGGGCTGGGATTGAATCAGAACGTGGATCCACACACTAATCACAAATGACTAAAATGGTGCTGATCGTGGCTTTTCTTGCCTGTCCTTGCTCTTGTGGTGCTCTTGGTTCTGCCCCAGTAGGATCACACCATCaaaaagtttttagttttttaatctgGGAATTGCTTGGGAAAGTCTGATTTTGAAACTGCTGTATTGTACTTGTTATTTAGTTAGTTTGCCCTGGTGGTGGTGTGATGTAGCTTGCATCTGTGCTCTGGCTCTTGGGATTGTGATCAG

Function

symbol description
ero1b Predicted to enable protein disulfide isomerase activity and protein-disulfide reductase activity. Predicted to be involved in protein folding in endoplasmic reticulum. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human ERO1B (endoplasmic reticulum oxidoreductase 1 beta).

NR:

description
ERO1-like protein beta isoform X1

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0003756 protein disulfide isomerase activity molecular_function
GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor molecular_function

KEGG:

id description
K10976 ERO1LB; ERO1-like protein beta

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001421 True 4728 mRNA 0.43 16 3564520 3587440

Neighbor

gene id symbol gene type direction distance location
AMCG00001420 egln1,LOC107737236,LOC107556149,LOC105893867,LOC107572057 coding upstream 9940 3546872 ~ 3554580 (+)
AMCG00001422 NA coding upstream 33790 3523338 ~ 3530730 (+)
AMCG00001415 NA coding upstream 144088 3419404 ~ 3420432 (+)
AMCG00001410 NA coding upstream 642241 2921972 ~ 2922279 (+)
AMCG00001406 NA coding upstream 907518 2618236 ~ 2657002 (+)
AMCG00001439 NA coding downstream 20875 3608315 ~ 3648819 (+)
AMCG00001438 NA coding downstream 89043 3676483 ~ 3741399 (+)
AMCG00001437 eif4a3,LOC107702040 coding downstream 178661 3766101 ~ 3771735 (+)
AMCG00001441 NA coding downstream 300802 3888242 ~ 3894909 (+)
AMCG00001440 NA coding downstream 317037 3904477 ~ 3914556 (+)
G157668 NA non-coding upstream 71351 3489063 ~ 3493169 (+)
G157640 NA non-coding upstream 126857 3436345 ~ 3437663 (+)
G157635 NA non-coding upstream 158118 3405148 ~ 3406402 (+)
G157632 NA non-coding upstream 163265 3394245 ~ 3401255 (+)
G157602 NA non-coding upstream 244587 3316486 ~ 3319933 (+)
G157783 NA non-coding downstream 294402 3881842 ~ 3917073 (+)
G157834 NA non-coding downstream 479648 4067088 ~ 4067627 (+)
G157966 NA non-coding downstream 1109114 4696554 ~ 4702861 (+)
G157975 NA non-coding downstream 1126455 4713895 ~ 4714160 (+)
G157985 NA non-coding downstream 1285255 4872695 ~ 4875144 (+)
G157369 NA other upstream 1563592 1971881 ~ 2000928 (+)
AMCG00001392 NA other upstream 1869534 1691676 ~ 1694986 (+)
G157196 NA other upstream 2975220 587975 ~ 589300 (+)
AMCG00001436 gng4 other downstream 161114 3748554 ~ 3765362 (+)
G157781 NA other downstream 287769 3875209 ~ 3880779 (+)
AMCG00001433 NA other downstream 435357 4022797 ~ 4023910 (+)
AMCG00001430 srf other downstream 457916 4045356 ~ 4062333 (+)
AMCG00001457 NA other downstream 1036027 4623467 ~ 4652000 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003739 ero1b coding NC_007122.7 CM002895.2 44502410 ~ 44524932 (+)