AMCG00001432 (ttbk1,LOC105907619)


Basic Information

Item Value
gene id AMCG00001432
gene name ttbk1,LOC105907619
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 4112070 ~ 4121193 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001432
CTGAAGAAAATCGGGGGAGGAGGTTTCGGGGAGATCTACGAAGCCCTCGACCTACTGACCAGAGAGAATGTAGCACTGAAGGTGGAGTCGGCCCAGCAACCCAAACAGGTCCTCAAGATGGAAGTCGCGGTCCTGAAGAAACTGCAAGGAAAAGACCATGTCTGTAAATTTATTGGATGTGGAAGAAACGAAAAGTTCAATTACGTAGTCATGCAACTTCAGggAAGAAACCTAGCGGACCTCAGAAGAAGTCAGCCCCGGGGGACCTTCACGATGAGCACAACCCTGCGATTAGGAAAACAGATCTTAGAATCGATAGAAGCCATTCACTCCGTTGGGTTCCTCCACAGGGATATCAAACCCGCAGTGCACCTGGACAGGATAATTGGCTGA

Function

symbol description
ttbk1 Enables protein kinase activity and tau protein binding activity. Involved in several processes, including positive regulation of macromolecule metabolic process; positive regulation of microglial cell activation; and protein phosphorylation. Located in cytosol and nucleoplasm. Part of neuronal cell body.

NR:

description
PREDICTED: tau-tubulin kinase 1-like

GO: NA

KEGG:

id description
K08815 TTBK; tau tubulin kinase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001432 True 393 mRNA 0.50 4 4112070 4121193

Neighbor

gene id symbol gene type direction distance location
AMCG00001431 NA coding upstream 16700 4083038 ~ 4095370 (+)
AMCG00001429 NA coding upstream 98188 3986722 ~ 4013882 (+)
AMCG00001440 NA coding upstream 197514 3904477 ~ 3914556 (+)
AMCG00001441 NA coding upstream 217161 3888242 ~ 3894909 (+)
AMCG00001437 eif4a3,LOC107702040 coding upstream 340335 3766101 ~ 3771735 (+)
AMCG00001435 NA coding downstream 14983 4136176 ~ 4153348 (+)
AMCG00001434 NA coding downstream 41480 4162673 ~ 4166553 (+)
AMCG00001446 NA coding downstream 57108 4178301 ~ 4204224 (+)
AMCG00001447 LOC104944420 coding downstream 109409 4230602 ~ 4242177 (+)
AMCG00001448 NA coding downstream 137827 4259020 ~ 4281342 (+)
G157834 NA non-coding upstream 44443 4067088 ~ 4067627 (+)
G157783 NA non-coding upstream 194997 3881842 ~ 3917073 (+)
G157668 NA non-coding upstream 618901 3489063 ~ 3493169 (+)
G157640 NA non-coding upstream 674407 3436345 ~ 3437663 (+)
G157635 NA non-coding upstream 705668 3405148 ~ 3406402 (+)
G157966 NA non-coding downstream 575361 4696554 ~ 4702861 (+)
G157975 NA non-coding downstream 592702 4713895 ~ 4714160 (+)
G157985 NA non-coding downstream 751502 4872695 ~ 4875144 (+)
G158014 NA non-coding downstream 766921 4888114 ~ 4888352 (+)
G158089 NA non-coding downstream 1191875 5313068 ~ 5315236 (+)
AMCG00001430 srf other upstream 49737 4045356 ~ 4062333 (+)
AMCG00001433 NA other upstream 88160 4022797 ~ 4023910 (+)
G157781 NA other upstream 231291 3875209 ~ 3880779 (+)
AMCG00001436 gng4 other upstream 346708 3748554 ~ 3765362 (+)
G157369 NA other upstream 2111142 1971881 ~ 2000928 (+)
AMCG00001457 NA other downstream 502274 4623467 ~ 4652000 (+)
AMCG00001480 NA other downstream 1244812 5366005 ~ 5383064 (+)
AMCG00001486 NA other downstream 1472487 5593680 ~ 5633349 (+)
AMCG00001489 NA other downstream 1748782 5869975 ~ 5871430 (+)
AMCG00001493 NA other downstream 1768643 5889836 ~ 5900998 (+)

Expression


Co-expression Network