AMCG00001439


Basic Information

Item Value
gene id AMCG00001439
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 3608315 ~ 3648819 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001439
TCGGAGCCCAGTCCAGCTCCGCCCTCACTCCGTAGCCCCTCtgcttgggggaaaaaaatattgttggtTCTTCGGCGCAGAAAGTGGGACAGCTCAGGGTGTGCAACTGAATTCGCATCCGAGGAGGTTTTACACAACTTTCCTGTCAAGTTTGAGTCCTGTGCCGTGTTGGCGATGGGTTTACAACGACCGAGCTGGTTCATCTGGATGAGCCTGCTGTCGCTAGCGGGGCCCGTCCGCAGCCTGAGCCGCAGGGAGCTCTTCCAGCACGGCGGGGCGGCGGGGGACCGGGTCCTGGCTGCCGGGGACGACGCCACCCAAGAGCTCGCCCTGGACACACCGCTGCATTTCTTCGACGGCAAATTCAACAGCGTCTATATTAACACCAATGGGTTCATTGCCACCAAGCAGCCTGAGGAGGAGAGCAGTCTTTTGACTAGTTTTCCACCAAGTTTTGGCACCATCGCATTGTTTCTGGCAGATCTGGACACCAGCGACGGGGTTGGGAAAGTGTACCTGCGTCAGGACTCCAGCCCAGACACTCTGCAGCTGGCCGCACAGCACATTAGCAGGGCCTTCCCCGAGGATGACGAGTTCATCCCCACACATGCTGTCGTGGTCACCTGGCAGGACGTGGCAGCCTATCAGGAGCCCAGGAGAGGCGATCAACTGGACAACAAGaaaaacacattccagGTGGTATTGGCATCTGGAGACAAGTCTTCCTATGCCATTTTGCTATATCCAAGGGATGGACTGCACTTCACTTCCACTCGACCCAAAGGAGCTGATGCAGAGCAACCTGCCAGGGCTGCCTTCAGCAAAGGACTGGAGAAGTACTTAATCTGGGGAACTCGACAGGGGCCGGTCTACTCCATCACCTCTGACAATGAAGACTCTATAAGAGAGCTCTTTGAGCACACCAATTCCGGCAAGCGAGGGGTGTGGGTGTACGAGATCGGGACCTCTCCGTACTTCAGTGCTGTGGCTCCGGGGGAAGTGACTGGGATACCCGCCGAAGCCCCTCGGGAGAAGAGCCACGGGGGCTATGATGATGAGGCCCCTGAGCGGGTTGTGAACCCAGGGTATGGGCGTGAGGGGCAGCAGCAAGTAGTGGAATACCCGCCCTATGAGCCTTACCCCCCACAGCAGCCAGCGGAGGAGCAGCGCCCTGCAGTGTACGAGGAGCCCGAGCCAAATCCTGGGCAGGAAGTCACTGGAGACCACCTTCCAGTTGAGCCCTATGCAGAGCCCATTCCCATCCAGCCAGTCCAGTTTGAGCCGCCTGTGTACCCCCCCGACGGTCACGTCCAGCAGCCACTGTACCCACCAGAAGACCGCAGTGTTGTCATTGTGGACGGAGACCTTGACATAGACGCCAACATTTTTTCCTACAACTCAGACACATGTGCCAACAGCCGACAGAAGTGCTCCATCTTTGCCGACTGCAGGGACTACCCCAATGGCTACTGTTGTCACTGTAGGCCTGGTTACTATGGCAATGGCAAGCAGTGCTTGGCAGAGGGGAAACCTCAGAGGATGAATGGGAAGGTGAGCGGTCGTGTGTACGTGGGCAGCTCTCCGGTCCCCATCGAGTTCAACGGCAACGACCTGCACTCCTACGTGGTGGCCAACGATGGCCGGGCCTACGTGGCCATCAGCACCATCCCCCAGAGCCTGGGCCCGGCCCTGCTGCCGCTCTCCTCCCTTGGAGGTGTCATCGGCTGGGCCTTTGCCCTGGAGCAACCAGGCTACGAAAACGGCTTCAGCATCATTGGAGGGGAGTTTACAAGGCAGGCTGAGGTGATCTTCCTTCCTGGGAATGAGAGGCTGAGCATCAAGCAGGAGTTCAAGGGCATCGATGAGCACGAGCACCTAGTGGTCAGCACTGAGCTGGAGGGGAGACTACCCGACATCCAGGAGGGCTCCACTGTGCAGATTGAGCCCTACTCAGAGATCTACCATTACAGCAGCAACATGatcacctcctcctccacccgGAGTTATACCATCACTCTGAAGGACGGCAACACTCAGACCAGGTCTTACCAGTGGAGGCAGACCATCACGTTCCAGGGCTGCTCTCATGACGAGGCCACCAGAGCCATCCCCTCCACACAGCAGCTCAGCGTGAGCCAGATCTTCGTGATGTACGACTCTGGGAACAACCTGATCCGTTACGCCATGAGCAACAAGATCGGATCTCTCCACGGGGATGAGGGGGAAGAGAACGCCTGCTTCACTGGGACACACCGCTGCGACACCAACGCTGTCTGCCGCGCAGGCCAGGGCAACCAGTTCACCTGCGAGTGCGCCTCCGGATTCCGTGGAGACGGGCGCACGTGTTACGACATTGATGAGTGCAGGGAGACACCGCAAAGCTGTGGGCACAACGCTGTCTGCAACAATCAGCCTGGCACTTTCCGCTGCGAGTGTGTCGACGGCTATCAGTTTGGCAGCGATGGGCAGACCTGTGTCGAGGTGGACCGGCCGATTGACCACTGCCAGGCTGGCACGCACGAATGCGACATCGCAGAGCGGGCACAGTGTAGCTACACTGGAGGGTCCTCCTACATCTGCTCCTGTCTGCCCGGCTTCGTGGGAGATGGCAGCACCTGTCGGGATATTGACGAGTGTCAGCCAAGCAGGTGTCACCAGGAAGCATTTTGTTACAACACTCAGGGGTCATTCACATGCCGCTGTAGGTCCGGCTTCTACGGGGACGGATTCCAGTGCAACGCAGAAGGATCAGGCATTGACCAGGCTGTCCGACCCACCCCTGTGGGGCCCACCACCAGGCCTGATGTCCATCCGCTGCCTCCTGGCACCCACCTGCTCTTTGCCCAGAGTGGGAAGATCGAGTACGTGCCTCTGGAGGGCCACAACATGAAGAAGGTCGAAGCCAAGGCTGTGCTACACCTTCCTGACAGGGTGGTGATCGGAGTGGCCTATGACTGTGTGGAGAAGATGGTGTACTGGACAGACATCACTGGTCCAGCCATCAGCAAGGCCAACCTGCAGGGAGGGGAACCCATCCCTGTCATCAGAACAGATCTGGGAAGTCCTGAGGGATTAGCTGTTGACCACATTGGGCGCACACTGTTCTggacagactccatgagggacAAGATTGAGGTGGCCAAGCTGGATGGCAGTCAGAGGCGTGTGTTGATCGACACTGACCTGGTCAATCCGCGAGCCATCATCGCTGACCCTATCAAGGGACACCTCTACTGGGCCGACTGGAACAGAGACGCCCCTAAGATTGAAACATCATACATGGACGGCACCAACCGGAGGATTCTGGTGAAGGATGACCTGGGGTTGCCCAATGGCTTGACCTATGACCAACACTCCTCCCTGCTGTGCTGGGCCGATGCAGGTACACGAAGAGTGGAGTGTATGAACCCCAATCAGACGGGCCGCAGGAAAGTCCTGGAGGGAATCCAGTACCCCTTTGGCATCACAACGTACGGGAGAAACTTGTACTACACAGACTGGAGGAGggatGCGATAATTTCTGCCGATCGCACCGTGGGCCGAGAGAATGATGAGTTCCAGCCTCAGAAACGCTCCCGGCTTTATGGAATCACCACTGCCTACTCCCAGTGCCTCCCAgGGCAAAACTACTGCACTGTCAACAATGGAGGTTGCACCCACTTGTGCCTAGCAATGCCTACAGGCCGATCCTGTCTGTGCCCCGACAACGCAGTGGGAGTGGGCTGTGTGGAGAGAGATGGCAGGTATTAGAGTGAGGGGGTAAAAAAAAGCAGACCAGGTTTTGTTATCGGGGGGACTATCTGTCCATTTCCTGATTTCTACCCACTGGTGCAGAAAGAAACTTCTGCCACTATAGCTACTCAACAAAGCACTGAGCACCAAAAGAGTCCAGTGTGTTTAGggttgtcattttttattttatttttttatcacccttttaaaatacattttatttttggttttcctgatttttttgttttgttttttgttttcattacaattattgtaaataaatatgttcaaggttttttttgttttttgttttttgcattgttttttcagtgGTGCTTTCAGTTTAATTGGAGTAAGATTTTCTTAAGTATCAGGTATTACTGTGAAGTTTACACTATAAGCAGAATAAAGTGGAGGTTGCAGGattgacaaacacagagacgCAAAATGGAGAGACGCAAAGAGTTTTAACGCCCCCCTTTTTGTCGGAGATCATCGAGCAAAGCATTTTGATGACTGAAGAAAAGAGTTTAGGAACCATGTATTGAAGTATTACACCATACCATGTTGATAGACTGTATACGAAGTTCATGTCAGAAACGTTTACATTCTGTACAGCTATCCAATAAAAAACGttaaaaccata

Function

GO: NA

KEGG:

id description
K06826 NID; nidogen (entactin)

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001439 True 4378 mRNA 0.54 19 3608315 3648819

Neighbor

gene id symbol gene type direction distance location
AMCG00001421 ero1b coding upstream 20875 3564520 ~ 3587440 (+)
AMCG00001420 egln1,LOC107737236,LOC107556149,LOC105893867,LOC107572057 coding upstream 53735 3546872 ~ 3554580 (+)
AMCG00001422 NA coding upstream 77585 3523338 ~ 3530730 (+)
AMCG00001415 NA coding upstream 187883 3419404 ~ 3420432 (+)
AMCG00001410 NA coding upstream 686036 2921972 ~ 2922279 (+)
AMCG00001438 NA coding downstream 27664 3676483 ~ 3741399 (+)
AMCG00001437 eif4a3,LOC107702040 coding downstream 117282 3766101 ~ 3771735 (+)
AMCG00001441 NA coding downstream 239423 3888242 ~ 3894909 (+)
AMCG00001440 NA coding downstream 255658 3904477 ~ 3914556 (+)
AMCG00001429 NA coding downstream 337903 3986722 ~ 4013882 (+)
G157668 NA non-coding upstream 115146 3489063 ~ 3493169 (+)
G157640 NA non-coding upstream 170652 3436345 ~ 3437663 (+)
G157635 NA non-coding upstream 201913 3405148 ~ 3406402 (+)
G157632 NA non-coding upstream 207060 3394245 ~ 3401255 (+)
G157602 NA non-coding upstream 288382 3316486 ~ 3319933 (+)
G157783 NA non-coding downstream 233023 3881842 ~ 3917073 (+)
G157834 NA non-coding downstream 418269 4067088 ~ 4067627 (+)
G157966 NA non-coding downstream 1047735 4696554 ~ 4702861 (+)
G157975 NA non-coding downstream 1065076 4713895 ~ 4714160 (+)
G157985 NA non-coding downstream 1223876 4872695 ~ 4875144 (+)
G157369 NA other upstream 1607387 1971881 ~ 2000928 (+)
AMCG00001392 NA other upstream 1913329 1691676 ~ 1694986 (+)
G157196 NA other upstream 3019015 587975 ~ 589300 (+)
AMCG00001436 gng4 other downstream 99735 3748554 ~ 3765362 (+)
G157781 NA other downstream 226390 3875209 ~ 3880779 (+)
AMCG00001433 NA other downstream 373978 4022797 ~ 4023910 (+)
AMCG00001430 srf other downstream 396537 4045356 ~ 4062333 (+)
AMCG00001457 NA other downstream 974648 4623467 ~ 4652000 (+)

Expression


Co-expression Network