AMCG00001446


Basic Information

Item Value
gene id AMCG00001446
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 4178301 ~ 4204224 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001446
GTCTCCTACCATTTCCAACTAACTCCAAGCCAACCAACATGAGGTTTGACGAGCTGCTGCAGGAGGTTGGTGCATTCTCCAGGTTCCAGTGCATGGTGATCCTGATCCTCTGCATTCCCAGAGTCATAATGCCCTTCCACTTCCTCCTGCACAACTTCATCTCAGCTGTGCCCCCCCACCACTGCGCTCTCTCTCGCCTGCACAATGGCAGCCTCGCTCCGGAACTCCCAGAAGCACAAGTGCTGCTTCTCCAAATCCCCAGGGAGCACGATGGCTCTCTCAGCTCCTGCACGGTCTTCACCCCCCTACAACTTCCTCCCTTCTCCGGAAACATCACCAACACCACCATCCCTTGCCCCCACGGCTGGGTTTACAATCACTCGCAGTTCCTCTCGACCACTGCCACGCAGTGGGATTTGGTGTGCGAGAACAAAAAACTCAACCAAGCTCTGGCAACTTACTTCTTCATCGGAGTCACACTGGGAGCAGTGATCTTTGGCTACTTATCTGACAAGTTTGGCCGCAAACCCATGCTGCTGGTCTCCTTTGTGGCCAGTACAGTATTCGGAACAGTGTCGGCTTTCTCTGTGTCCTATGTGATGTTCGCTGTGACCAGGACGCTGAGTGGCATGGCCCTTACCGGAATGTCCCTCTGCACCATTGCCTTGAGTGTGGAATGGATTGACATCAAGCACCGAAACTTCACCAGCACTATCATCGGTCTCTTCTGGAGTTTTGGGAGCATGCTGCTGGCCCTGCTCGCCTATTTGATCCAAGACTGGAGACAGCTGATGCTCGCGGTCACCTCACCTTGCCTCATTGCCATCATCACGTGGTGGTGGCTCCCCGAGTCTGCGAGATGGCTCTTGGCTAATGGAAAAGTGGAGAGCGCTAAACAATACCTAGCCCAGTGTGCAAAAATGAACAGGAGGCAAGCTTCTTCCTCTAAGATTAGCACTGAGGCCCTGACCAAGATAAGCATATCAGAGAATGCTAACCAAAAATATTCCTACTTGGATCTGGTGAGGACcccaaaaatgaaaagaatcaCAGTTAGTTTGGGAATTGTCTGGTTTGGAGTTGCTTTCACATATTATGGCATCAGCTTAAAAATCACAGGCTTTGGAATGGACATGTACCTCACGCACTTTATATATGCTGCCATTGAGGTGCCGGCCAAAGTGGGGACCTACTTCGTCCTTGATAGAATTGGGCGAAGAAACAGCCAAGCTTGGTCTCTTATCATCACAGGAATCCTAATAGGAGTTAACACAGCCATCCCCACAACTCAACGACTGGTCCGCACTCTGGTTGCCGTCCTCGGGAAAGGATTCTCAGAGGCAGCCTTCACCACGGCCTTCCTCTACACCGCAGAGCTTTATCCCACTGTCCTCAGGCAGTGTGGTCTGGGTTATACTTCTTTCGTGGGACGCCTGGGGGGCTCGTTGGCACCCATGATAATGCTCCTGGAGGACTTGTGGCTTCTGACACCTCCCCTGATCTTTGCTGGAACCGCCGTTTTCTGCGGCTGTATCGTGTTCCTGCTGTCGGAAACACAGGATGTCCGTCTTCCGGAAACGGTGGTTGATGTGGAGGAGGGCAGAGGCAATGCTAGCTCAGCTACTTAGGTGACAGGAGTTTGGATTTGTTCCTCGTGGCGGGAGCACTTCCCTTCAGGGCATCTTCATTAAGCCTGGTGAAAGATGAAGTTTGAAAACCTCCTCACCGAGATCAACGGCTTTGGGAAGTACCAGATCCTGATCTTCTGTTTGATCATCATCCCTCGGATTACCCTGCCCTGCCACTTCCTGCTCAACAACTTCATCGCTGCCTTGCCCTCCCACCACTGTGACTTTTCCTCCCTGGGGGATGGCGACGTTTTCGGCAACCTCTCCCAGGAGCAGAGGCTGGCTGTCAGCATCCCCAGGAACCCTGATGGGACTCTCAGCAGCTGCAAGATGTTCGCTGAGCCTCAGTTCCAGCTGCTGAATACCACCTATGAGAACGGGACCCAGCCTGCCATAGTCAGCTGCCAGAATGGATGGGTGTATGAAAACAGCACCTTCAAATCAACTCTTGCAACAGAGTGGGACCTGGTTTGTGACAAGAAAGGAATGAATCGGGCCACCGCCACCATCTTCTTTGTTGGTGTGATGTTTGGAGCTGTTGCATTCGGCATCCTCAGTGACAGGTATGGCAGGAAGCCCATGCTCCTGGTGTCCTATATTTCAGCGATAGCTTTTGGATTCGCCAATGCCTTCTCAACATCCTATATAATGTTCGCCATCACGCGTTTTTTCACCGGTTTCAGCCTCACAGGGATCAGCATCATTTGCATTGTCCTCAGTATGGAGTGGGTGGACATTGAACACAGGACATTCATAGGGGTGATAGGTAGCATGGCCTGGAGTGCAGGCAACACACTGCTGGCTGGCATCGCCTACTTAGTGAATGACTGGAGGCTCCTGGTTGTGACTGTCACCTCCCCTCTTTTCTTGGCTGTCATAACCTGGTGCTGGATCCCAGAGTCTGCGAGATGGCTGCTCGCCAACGGAAAGGGGAAACAGGCACACAAGTACTTGTCCAAATGCGCCAAAATGAACAACAGGGAGGAATTCTCATCCAAAATGACTACCGAGACACTTTGCAGCATTATGACTGTGGAGAAAGGAAACAGGAATTACACCTACCTGGACCTGGTGAGGACTCCCAAAATGAGAAAACTGGCTATTTACACTGGGACAGTGTGGTTTGGAGTTGCCCTGACCTATTATGGAATAAGCCTGAACATTACTGGGTTTGGTCTGAATATATACCTCACCCAGTTCATCTATGGTGCCATTGAAGTGCCCGCCAAACTGCTGGTCTACTACAGTCTTGATTGGGTGGGCAGAAGACACAGTCAAGCTGTACCATTAATTCTGACTGGAGTGTGCATCGCCATAAACATTGCCCTTCCGAGGGATTTATGGCTTTTCCGCACCATCGTTGCCATTCTTGGAAAGGGTCTCTCAGAAGCTTCCTTTACTGTGGTCTTCCTTTACACAGCTGAGCTTTACCCTACTGTTGTGAGACAAAACGGCATTGGCTACAACTCCTTCATGGCGCGGCTGGGGGTGTCCTTCGCCCCACTGATCATGCTGCTGGAGGACGTGTGGAGGATGTTACCCCAGCTCATCTTCTGCTTGGTAGCCATCGGTGCCGGACTAGTGGCGTGGCTGCTCCCGGAAACCAAAAACGTACGCCTGCCAGAAACCATTGAGGATGTAGAGCAGACCAGGAAACGGAGTGTTGCCTTTCCAGCCCAAGACAATAACTAAATCCCACTGAAGCCCCTAACCTAGTCTCTGAAAACAGCTGGGAAACCGTTCGAAATGAGAAGaactgaaaaaggaaaacaaagattgTGGATACACCTATTGTCTGGTTGCCTCAAAAACTATACGATAAGAAAATGTATACGGTTTTCTGATCCATACTTTATCTTCCGAAAGATACACATCTTAAAAAGTAAgcaaatgttttcagaaaatcTAATTCTCTGAATGCATTGTAAGTCCTTGTTATTGCATCAGAGGTTAACTGGCTATAgcactttcatttgtattgttcaCTCAGGAGTGACCACAGATTGCATTGTACACATCTGtgctttacatgttttatacCTTTCCATGCGTTACACTGCACGACAATCCTACCCCTAGAATGAATGAAACGTACTTGAATCATTTGTACACATTCTAGTTTCCCCGATCTGGTTAattgggttttcattttttacttcaccctctctctcctgcctggcagaagagagggaaagataCAAAGTTGGATTTAAAATACTCTGTAAAAAGTCCCACAAATTAAAGACAATTCacataataaaaaggaaaagtttaGTAATACTAGTGTTTGTCTGAATCATCCATCAACCCCAAACCTTTAGAAAAGTTTCTGCTTCCACTGTGACTGAATACAGCAGTGTagtcattttcagaaaaaagtTGAGGAAAATGGTCTTGCCTTGGGTGCTCTAAGGtataatgtaaatgcaaatcTGCTACAGTCACAATATACTCCTCTCCAAAAAAGGGTATTCCACATCACagataaaaacagattaaatgagAATGGCATGTTCATATCATTCCATATTTGACTATGCCTACTCTCTTTGTTCCCTCTGCTCAGATTGTTATCGACTATCTTCATAAAAGTCACATCAGAAAAGACTCCTCAGATCTTATTACCCAGAACAAAATTACCTCAAGACACAGGAGACCTGCAAAAGtgtataatgaaataaataaatcaaataagttTAGGACTAATAATAGGAGgcatcatcagcctttatcgatccactgctagaTGCAGGCCTCCAAAATGTTTGCACTTGTTTTAATGAACTTTTTCAGGTCCCAAcagcaaatcttatttaatcttttagGATATATAAAGTGGGGTCAAAATAAATCTCTCAATTCTGTTTAAGGATAAAAAGCAATCACCCATCAGTGTCAAAACTATGTTTATTCAAGACTGTTATAAATagtaattatacaaaaacaaagcaaaactaaattgCTGTGCTTATTATGCATTGAAGTTTTCATATTAAGTTCCATCACTTCAGGGCTCAaatcaaacagttttttttttgtttgtttttttaaacaatggttTCAGTACAACAGCtgacaaattatatacaaattaaacaatcgTCATTCTTCAAATGCCAGCAAATCTTTCAGTCGGAACCACCTGGGCTTTTATTACAACTTACCTTTTCATCCTTGTATTTCATGTTcaagatacataaatacacagcaATGCAGCTTTTTTAACAGCAATATTAACATTGTTCATGATAGAGgccattacatttattataattgtcaacacaaggacttttttttttttttttttttgtattacacaTAA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function

KEGG:

id description
K08204 SLC22A7, OAT2; MFS transporter, OCT family, solute carrier family 22 (organic anion transporter), member 7

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001446 True 4950 mRNA 0.46 19 4178301 4204224

Neighbor

gene id symbol gene type direction distance location
AMCG00001434 NA coding upstream 11748 4162673 ~ 4166553 (+)
AMCG00001435 NA coding upstream 24953 4136176 ~ 4153348 (+)
AMCG00001432 ttbk1,LOC105907619 coding upstream 57108 4112070 ~ 4121193 (+)
AMCG00001431 NA coding upstream 82931 4083038 ~ 4095370 (+)
AMCG00001429 NA coding upstream 164419 3986722 ~ 4013882 (+)
AMCG00001447 LOC104944420 coding downstream 26378 4230602 ~ 4242177 (+)
AMCG00001448 NA coding downstream 54796 4259020 ~ 4281342 (+)
AMCG00001445 NA coding downstream 109714 4313938 ~ 4315949 (+)
AMCG00001451 rcor3,LOC106585063,LOC106564802 coding downstream 285229 4489453 ~ 4495851 (+)
AMCG00001450 NA coding downstream 296125 4500349 ~ 4510856 (+)
G157834 NA non-coding upstream 110674 4067088 ~ 4067627 (+)
G157783 NA non-coding upstream 261228 3881842 ~ 3917073 (+)
G157668 NA non-coding upstream 685132 3489063 ~ 3493169 (+)
G157640 NA non-coding upstream 740638 3436345 ~ 3437663 (+)
G157635 NA non-coding upstream 771899 3405148 ~ 3406402 (+)
G157966 NA non-coding downstream 492330 4696554 ~ 4702861 (+)
G157975 NA non-coding downstream 509671 4713895 ~ 4714160 (+)
G157985 NA non-coding downstream 668471 4872695 ~ 4875144 (+)
G158014 NA non-coding downstream 683890 4888114 ~ 4888352 (+)
G158089 NA non-coding downstream 1108844 5313068 ~ 5315236 (+)
AMCG00001430 srf other upstream 115968 4045356 ~ 4062333 (+)
AMCG00001433 NA other upstream 154391 4022797 ~ 4023910 (+)
G157781 NA other upstream 297522 3875209 ~ 3880779 (+)
AMCG00001436 gng4 other upstream 412939 3748554 ~ 3765362 (+)
G157369 NA other upstream 2177373 1971881 ~ 2000928 (+)
AMCG00001457 NA other downstream 419243 4623467 ~ 4652000 (+)
AMCG00001480 NA other downstream 1161781 5366005 ~ 5383064 (+)
AMCG00001486 NA other downstream 1389456 5593680 ~ 5633349 (+)
AMCG00001489 NA other downstream 1665751 5869975 ~ 5871430 (+)
AMCG00001493 NA other downstream 1685612 5889836 ~ 5900998 (+)

Expression


Co-expression Network