AMCG00001447 (LOC104944420)


Basic Information

Item Value
gene id AMCG00001447
gene name LOC104944420
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 4230602 ~ 4242177 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001447
AGGCAGTGGAGGGAAATGTGTATTGATCTGTAGCGCCCCCTGACGGACCACTCGCAGGCAGCCGCGGTGTTGGACAGCTCTGGGCTCCGCCCGGCGCCCTGGCCCTCATCAGTGCGCTCTGTGCTCGACAACATGGCGGCGCAGGTAGAGCTGTTTTGCCTGGATCCCTTTCCGTCTCACTACCATCCTCTACACGTGTTGCTGGCCAGGTGTCATTTCAACCGCGTATTTCCGAGTAGACATGACTCCCCCTGCGTGCTGCTGGCTGCTCGACGGCGACAGCCCCCTCCGAGGACTGACATTTTCATCTGCGCCCAGGTAACTGCAGAGGAAGACATCCCGGACGGCGGGGCTGTGGTGCGCAGCGACAGTGTTGTAAAAGTCTACACAAGCAGGCTTTTTCAGAGACATTACGGGTTTCAGGCCGGCGCGAAGGTTGCGCTGCGGTTAGTGGCGCCGCTAGGTCTCAGTAAAATAGTCATAGGGGCGAGAAGTAGGCAGAGTTTTAAATGGGCCACTTCTGACAAATTCTCCAATGGGCTTCTTATACTCGCCTCCTGTCAGAAACAAACCCTTTTGGCCAGGCAAGGGGACGTGTTGCTGGTTCCTTATCATCCCCTGTTTGGCGATGACATTGCCCAGGTCCACCAGCATCTCCTGGACCTGGTTGTCTTGGAGACCACGCCTGTCACGCAAGGCGTCATCAGCGTCAGCACCAGCGTGCTAGTGTCGGACTGCAGGGACCTGGCGCCCCCCCACAGCTCCTGGGAAGGGTCTGGCCATGCATACACCACCAGACTGTTCACATCCCTCTATGCGTCCGATTTTGCACACTATGCCAACAGTCTGAGCGGAGGCAGTTCTTTGCTGGACACCAAGAAAGTGGTGAATTCATCCTTTTCGGACTTTCTGCAAGCTTTAGAGTGCAAGGTTGATGTCCGGGTCGTGGACGTGTCCAGCCTCATTAAACAGGCGAGGATCAAACCCAAAGATGAGCGAGAGTCAGGCTTCGACATAgatgcgtgtgtgtttgtgagcaAACAGGCACTGCTGAAACTGGGGCTGTTCAACCACGAGTGGGTCATCGTGTCCGCCTTCAGCGCCACTTCGGACAAGATGAGGAACTCCACGAGGAACGAGCCCCTGCAGGGTCTCGGGAGGGCTGATGACAAAGTTGGCAGCAAGGATGCGGGGAAGAACAGGGGCGGCCACTTCGCTGCCATTGTTGTCGCCGATTTTGCCAAATCccctgagctggagctgcaGGACAGTGCAGGATTGGTGTCGCCCTCTCTGTGGTTCAACCTGTCCGGTGGTGCCCAGGTGCCCATCAGCAGCAGGCCCGTTAAAATAAAGAGGTGCTACGAGCGGCTCTCCCCAGAGGGAAGACGGCGCAAAGACAGCAAGTCCTGCACCGTGTCCCCACCCTACGCCACAGCACTGCACGTCGAACCTGTGATTTCACCAGACTACAGCGCCAGAGGGGTCTTTGACAGTGTTTTGTATGAACACTTTAGCTCACCCAGGCTGGTGCAGCTGTGGGATGTGTTGTGCATTCCCACTGAGGGACACGCTGAGTTCCTCGAAAGTCACGCAGAAGGATTTACGAGgtggCCAGTCCTCTATTTCAAAGTGAAGAAAGTCTGTGGCGCCACTGTACAGAAAGGAGAAATTAACCCTCTGGGCTACCTGGCAGATACAGAGCACACGTCTCTGTACATGGCGGGATGCACTAACAGCTGCATCCCATCCTCCGGCCTGGCAGATGGGCCCTCGTTCTGGAGCTGCCTCTCTCCCCCTGGCCTGTCGCTCACCGTGGAGGTGCTCACCAGCATCATTCAGCCTTACGTCACGGAGGGCGCTATAATGCTGGCGAGCGCCTGCACTGTTTTGGTCCAGGGGCCGAGGGGCAGTGGAAAAGTCACCGTCATCCGAGCTGCGTGTAGGAGACTGAACCTGCACTTGCTCaaggtggactgtgtctctctgtgtggcGAAACGGCCGGCGCCACGGAGGCCAAGCTCCAGACTGCCATCTCCCGGGCCAAGCTGCACCGGCCCTGCATCCTGCTGCTGAGGAACGTCCAGCTGGTGTCCAGGGAGCGCGGCGGTCCCGGGGACGACCCCAGGGTGGTCTCTGCTCTCCAAAAGCTCATTGCGGACACGCCAGCCAGCTGTTGCCAGGTGGTCGTGGTTGGCACCGTGTGCAGCCCGCATGAGCTGTCCCCCGATGTGATGGCAGCATTTGTCCACCAGGTGCCAGTGGAGAGCCCCACCGAGGAGCAGAGGAAAGCGATGCTGACCAGTCTGGCTGCGGGGCTGCCTCTGGGGAAAGATGTGAACCTAGGCAAGATCGCCAAGCAGACTGCGggctTTGTCCTTGGTGATCTTAATGCACTGCTGGCCCATGCTGGGAAAGCAGCCCACAGACGAATCCTGAAGACCTGTTTCCCTGGTGGTATCAGTTTGGCAGAGGAGGAGGACCTGTGTGCCTCAGGAGTGTCCATCTTGGCAGAGGACTTCAGCGGCGCCCTGGACCAGCTGCACCAAGCGCATGCCAATGCCATAGGGGCCCCCAAGATCCCGTCGGTGAAGTGGCAGGACGTGGGTGGCCTCCAGCAGGTGAAGAAGGAGATCTTGGACACCATCCAGTTGCCCCTGGAGCATCCCGAGCTGCTATCTCTGGGCCTGAGGCGCTCTGGGCTGCTGCTGTACGGGCCGCCGGGCACTGGCAAAACCCTCCTGGCCAAAGCCGTGGCCACTGAATGCGCCATGACCTTTCTCAGTGTTAAGGGACCAGAGCTGATCAACATGTACGTGGGACAAAGTGAGGAAAACGTTCGAGAGGTGTTTTCAAAAGCAAGGGCTGCTTCCCCCTGCATCATCTTCTTTGACGAGTTGGATTCCCTGGCTCCCAACAGAGGCCGGAGTGGAGACTCAGGAGGCGTCATGGACCGAGTGGTATCTCAGCTCCTCGCTGAGCTGGACGGGCTACACTCCTCAGGGGACGTGTTTGTGATCGGAGCAACCAACCGACCCGATCTACTCGACCAATCACTGCTCAGGCCTGGCAGGTTTGATAAGCTGGTTTATGTGGGAATCAACGAAGATAAGGAGTCTCAGCTACAAGTCCTGAAGGCTATAACCAGAAAGTTCAAGGTGGATCTGAGTGTCAGTCTCTTGGACATCATTGAGCATTGCCCCCCCCAGCTGACGGGAGCGGACATGTATGCGCTTTGCTCGGATGCCATGACGTCGGCCATCAAAAGGAAGATTTGCAGGATTGATGAAGGTCTGGACACAGAAAATTCTGAGCTTGTTCTGACACAGGAGGATTTCCAACACGCGCTAGAGAAACTATATCCATCTGTATCCGATCAGGAGCTGCTGAAGTACAAACTCATCCAACAGAAATTCACAGCAAAGTAACAGCACCCAGGTCGGCCCAAGATTTCTTTAATGACATCCCTTTTCAAAGCTGGCCTTCCGCAGGCCAATCCACATACTCCTGCACTACATTCACAAAACGCAGAACTACTCCTGAAGCTtactccttttttgttttctatttttttgtttaccttTTGGTTTTAGCGGGaacagaaagggaaaaacaGAATCACAGAGCTCAGTTTTCAAGGTCCGCTACACCTGCTAGAAGTTCATCCTTCAAATCACAAGCACTTTTTACTTCATagggaaaaaaagaatgttactacttgtaataatatttattataaacattgAGCTTCTCGATGTTTGCTACTGTTCTCCATGCCCCAGATTAGCATTAGCAAAAATAACATactccataaaaaaaacaccaaataaacCCTTAAATCTGTCATTACATTTTCACCAGAGATATATAAACATGTCGTAACATTAACAGCAGCTTAGACACACTGGCCTATTTGTAAtagctattttatttaatttttttaacaaactgctgtaaaacaaatcactcactttttagaagaaaatatgtatttgtcttaCATGATTAATGGTAAATTCAGCCAGTCGCAATGCTGTAGTTTGTTAGTCACATATTCtatgcaattatttaataaaataaaatatgaatgtagc

Function

NR:

description
PREDICTED: peroxisome assembly factor 2-like

GO: NA

KEGG:

id description
K13339 PEX6, PXAAA1; peroxin-6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001447 True 4095 mRNA 0.53 17 4230602 4242177

Neighbor

gene id symbol gene type direction distance location
AMCG00001446 NA coding upstream 26378 4178301 ~ 4204224 (+)
AMCG00001434 NA coding upstream 64049 4162673 ~ 4166553 (+)
AMCG00001435 NA coding upstream 77254 4136176 ~ 4153348 (+)
AMCG00001432 ttbk1,LOC105907619 coding upstream 109409 4112070 ~ 4121193 (+)
AMCG00001431 NA coding upstream 135232 4083038 ~ 4095370 (+)
AMCG00001448 NA coding downstream 16843 4259020 ~ 4281342 (+)
AMCG00001445 NA coding downstream 71761 4313938 ~ 4315949 (+)
AMCG00001451 rcor3,LOC106585063,LOC106564802 coding downstream 247276 4489453 ~ 4495851 (+)
AMCG00001450 NA coding downstream 258172 4500349 ~ 4510856 (+)
AMCG00001453 NA coding downstream 270007 4512184 ~ 4517913 (+)
G157834 NA non-coding upstream 162975 4067088 ~ 4067627 (+)
G157783 NA non-coding upstream 313529 3881842 ~ 3917073 (+)
G157668 NA non-coding upstream 737433 3489063 ~ 3493169 (+)
G157640 NA non-coding upstream 792939 3436345 ~ 3437663 (+)
G157635 NA non-coding upstream 824200 3405148 ~ 3406402 (+)
G157966 NA non-coding downstream 454377 4696554 ~ 4702861 (+)
G157975 NA non-coding downstream 471718 4713895 ~ 4714160 (+)
G157985 NA non-coding downstream 630518 4872695 ~ 4875144 (+)
G158014 NA non-coding downstream 645937 4888114 ~ 4888352 (+)
G158089 NA non-coding downstream 1070891 5313068 ~ 5315236 (+)
AMCG00001430 srf other upstream 168269 4045356 ~ 4062333 (+)
AMCG00001433 NA other upstream 206692 4022797 ~ 4023910 (+)
G157781 NA other upstream 349823 3875209 ~ 3880779 (+)
AMCG00001436 gng4 other upstream 465240 3748554 ~ 3765362 (+)
G157369 NA other upstream 2229674 1971881 ~ 2000928 (+)
AMCG00001457 NA other downstream 381290 4623467 ~ 4652000 (+)
AMCG00001480 NA other downstream 1123828 5366005 ~ 5383064 (+)
AMCG00001486 NA other downstream 1351503 5593680 ~ 5633349 (+)
AMCG00001489 NA other downstream 1627798 5869975 ~ 5871430 (+)
AMCG00001493 NA other downstream 1647659 5889836 ~ 5900998 (+)

Expression


Co-expression Network