AMCG00001460


Basic Information

Item Value
gene id AMCG00001460
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 4914851 ~ 4939823 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001460
GGCGTACTTGTTCAgctcagcccagcccagccctaCGGCACCCAGACGCTCAGCCAAACTTAAGGTCGACTTTTCCAGGAAAGGTGGCGGGGATTTGGGGTATAAAATAACCAAGAAAAGCTGCTCCAAAACCAAGAAGCAAAGACATGGAAGACGCGCATATATCCTCCACGACCGCCCGCTCGGACGAGCATCAAGAAGACTACGAGCAGAGGGATCGGAACCAGCTGTTCGAGGAGGCGGCCGGGTATCTGCTGGGGGAGAACAACGAAGCCGAGCCTAGAAAAGTGCCAGAGGATGATATCTTGGACTTAACCGGCGGACCCCCGATGGATGATTTTTACTCTCGCAAACGGGAGGACCCCGTCCCAGACATCTGGTCGGACTCTCCCTCTTCTTTTAGCCTGGATCCCTCCAGCAACAAGCTCAAGGAGCCGCTGAAGCCGCCCTTCGCGGAGCCGGCGGAGACGAAGACAAAGGCGGGGGAGGTGGAAGACAAGATCCTTAAGCCAGAAACACCCAAGGCGGCCCCAAGGAGCCCAGCGAAGGAGGCGTCTCCCCCGGGTTCGTCATCACCATatgaacccatttttccttcttctgctCCATCTCAGCCTCTGGCGCAGTCCTTTGCAGAGGGCTTTGTGGCTATGCAAGAGCAACCACGCAGCACTCAACCACTAGATGAGAAGGAAGGCTCAGCTGTCTTATGGACTGTCCCTCCagtctcctctctgtctcctcttccttctcctgACTCTTTGGAAGACCTCTCTCTATCTGAAAGCCCCAACCAGGCCCCTTCTCTAGGTGCACCCTTTGGTTCTTGCTTGCCAGGTGATCCTGTTCAGACAGCTGTCCAGGAAATGCCTTTGAGTGAGGAGATGAAGAGGTCTGAATGTAAAACGGAGACCGATCATCCAGACGCCAAACTGAGCCTTGACCGTGATTACCAAAACCTCCAGGCTGGGTTAGACAAAGTCGACATGCAGGCCACTCCAGCTGTAGATGCTACCTTTCCTTCTCTGGGAAGTGACCAGTCCCTGAACTCCCAGCACGAAATGAACTTTGATCTCAGCCCAGGGGAGCTTGTGAGTGAACAGAAAGAGGCTCGGCATAAAGAGGAGGTCTCTTTGTCCCCTGAAAGTGTTCTGAGCATTTCTGGTAAGGCTGCCACGCTCGAATTTGGGTCACAGCAGGATCTAGTGAAGTCTGTAGTCTGTGAAGACAGTGGGGTTGCCTCTTCTCCTGATGAAAAGTTAGGGAGTTCAGTAGGTTCTCCTGAAGAGGAAAAAATCCTCCTTGACCAAGAAGGACTCATCAAAGGTACAGATCATCTTGGAGAATCCCAATTGGAAACTGCTGGATCTGCCCTGCCACAGGTGCCCCAGGTCCCAGAGCCTCCATCAGGAGATGCCACCCAACCTTTTATTTCATACGCCACGTTTGACCCTACAAACAACTTTGATACTTTACTCACTGACTTTCAGGACAGTGGCACAGCATTAGATGCATCTGAAAAGCTCTCGGCCTTAAAAGTGTCTAGTGGTGAAACTGAAAGTCAAGCACAAGTGAGCCATGAGATGAAGCCTGCTGCTCTTGAGACATCCCTCCCCAAAGCACCCTCACTAGAATTTTCTCCCATTGCCGATTCTAGCAGTGGGTTCCCAGAATGTGTTGAAACAGCCTCCGAAAGCAGTGCTGCCAAAATGTCAGAAAGCCCGACACCTGACTTGGTGCAAGATGCATATGACAATGATTCGCAAGTTCCAACTCCCACAAAGCCTAAAGGAGCAACTCCTGTAGATTTGGTTTTAATGACCTCTGATTCAGTCCAGGAACAGTCTGATCCTTCAATGCGTCTTCCTACATCTCCCAGAGTGTCTGAGACCTCTGCAGTACCACCTACTACACTaccagatatcttgaaatcgTCTCCTTTGAGTTCTGGCAAAGTTGATTCTGGATCATCTGAAGGATCTCCGGATTCCGAACAGAGCCCTATTCTGGAACTTCAGAGGGAGATGCCTGACCTGTCTGTAAAAACGGAGGCTGCCAAAccatttgtctttgatttggaCTCCAGGATTTCAGCTTTGATGGAATCCACTGAGAATGTTGCACCTAAAAAGGCAGAAGTGGAACATGCCTTTGGACAAACCTTAGATATGCCGCTTGGTTCTTTTGATCTTGTTAAGGAAGCTCAAACCACCACTGACCACAAAGACCAGATGGAGACAAATGAAGATGCAATGAGGTTTTCATGTCAAGATGCTCCTACATTTTTGGACAGACTTCAATCTCACAGCACTGAGCCAGCTATGAATGTAACTAGTCCTCCATCAAAAACCATGGTCCCTGAAGAATCTGATTCTGAAAGTCCCATGACAGATTCCCTATCCCCCGTCCTGGAAGCAATGGCAAAGAATCCAGCcagttttcaaattgaaattgagGGCAAATATCAGAAGGACAGCGACACGTCCTCAGTCCCTGTTGCCCATGATTTCCCGCAGAGTAGGGCTTATTTGGAAGAGCCGGAAGACGATGCAGAAGAAGCTTTTGACCAAGAAGTCTCCTCTGAAGAGTTTGAAATCATAGAGCGACCCCCTGCTGAACTGAAAGGCGTTATAGATGAGTTTCTGGAAACGCTGGATAATTCTAAATTCGCAAAGGCGTCAGAAGCTGGCACAGATGATGATGCGTCCCCGGGTTTCGGGCAGGATGAGTCGGCGCCAGAGATTGGAGAACTTCATGTAAGCCTGCAACAAAATGCGTATATGATTTTGACCGAGCCTGCTTCCAAGGCCCCAACACAAAAGCAGCCAGCCGAAATCGAGCCCCCAGTTGCCTTCTCGGAGCAGCTGAAGGAGGATGAAGCCCCAGCAGCTGTTTCAGCCTCTGCTTTCTCCCACGATGCCCCGGCCCGTTCAACTGTGGAAGAGATGGAGAAACTCGCTCCTCCTGCTCTGAAGACCGCAGAAGACAAGCCCCCCTGTGACACCCCACACCTCGATGTCCCTAAAGATGTGCAGTTAGCGAAACTGAGCACAGAAGCAGCGATCTGTGTAGCGGGCGAGTGGTCGGAAGGCCGGCGCTTAGATCGGGGCGTTGCGGCGTGCGGACCGCTAGAGGCCCGGGCAGGTCACTGCGCGCAGTCCGGCGGCTGCTCCGTGCGCTGCGACACCGACAGCATCAGGGACGGGGGGGTGAAGGGGACACAAAACAGACCTCTCTCCGGAGTGGTGGACCTCCTGTACTGGCGCGACATCAAGAAGACGGGCGTGGTTTTCGGGGCCAGCCTGTTCCTGCTCCTGTCCCTCACGGTGTGCAGCATCGTGAGCGTGTGCTCCTACATGGCCCTGGCCCTGCTGTCTGTCACCATCACCTTCAGGATATATAAGGGCGTCTTGCAGGCGGTGCAGAAGTCCGATGATGGACACCCATTCAAggcTTACCTCAACTCGGACGTGGCTCTGTCTGAGGACCTGGTGCACAAGTACAGCGATGTGGCCCTGTCTCACCTCAACTGTGGCCTGAAGGAGCTGCGGCGCCTCTTCCTGGTCGAGGACTTGGTGGACTCTCTGAAGTTTGCAGTGTTGATGTGGATTCTCACCTACGTTGGTGCCTTGTTCAACGGCTTGACTCTTCTCATTCTGGctctGATTGCTGTGTTCAGCGCCCCAGTTATTTATGAAAGGCACCagGCACAGATTGACCATTATGTAGGGCTGGTGAACAATCAAGTCAAAGACATCGTTGCTAAGGTCCAGGCGAAAGTCCCCGGCCTGAAGCGCAAACCGGAGTAAGGGGCCG

Function

GO: NA

KEGG:

id description
K20720 RTN4; reticulon-4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001460 True 3816 mRNA 0.52 10 4914851 4939823

Neighbor

gene id symbol gene type direction distance location
AMCG00001459 NA coding upstream 29248 4876148 ~ 4885603 (+)
AMCG00001462 NA coding upstream 44109 4869079 ~ 4870742 (+)
AMCG00001461 NA coding upstream 47967 4802172 ~ 4866884 (+)
AMCG00001463 NA coding upstream 135065 4770617 ~ 4779786 (+)
AMCG00001452 NA coding upstream 395723 4518304 ~ 4519128 (+)
AMCG00001470 NA coding downstream 309551 5249374 ~ 5250444 (+)
AMCG00001479 NA coding downstream 463402 5403225 ~ 5413536 (+)
AMCG00001478 NA coding downstream 526073 5465896 ~ 5468938 (+)
AMCG00001475 NA coding downstream 541461 5481284 ~ 5486455 (+)
AMCG00001476 acoxl coding downstream 551503 5491326 ~ 5502268 (+)
G158014 NA non-coding upstream 26499 4888114 ~ 4888352 (+)
G157985 NA non-coding upstream 39707 4872695 ~ 4875144 (+)
G157975 NA non-coding upstream 200691 4713895 ~ 4714160 (+)
G157966 NA non-coding upstream 211990 4696554 ~ 4702861 (+)
G157834 NA non-coding upstream 847224 4067088 ~ 4067627 (+)
G158089 NA non-coding downstream 373245 5313068 ~ 5315236 (+)
G158104 NA non-coding downstream 481648 5421471 ~ 5423092 (+)
G158184 NA non-coding downstream 768269 5708092 ~ 5734559 (+)
G158230 NA non-coding downstream 952223 5892046 ~ 5892246 (+)
G158332 NA non-coding downstream 1457097 6396920 ~ 6398188 (+)
AMCG00001457 NA other upstream 262851 4623467 ~ 4652000 (+)
AMCG00001430 srf other upstream 852518 4045356 ~ 4062333 (+)
AMCG00001433 NA other upstream 890941 4022797 ~ 4023910 (+)
G157781 NA other upstream 1034072 3875209 ~ 3880779 (+)
AMCG00001436 gng4 other upstream 1149489 3748554 ~ 3765362 (+)
AMCG00001480 NA other downstream 426182 5366005 ~ 5383064 (+)
AMCG00001486 NA other downstream 653857 5593680 ~ 5633349 (+)
AMCG00001489 NA other downstream 930152 5869975 ~ 5871430 (+)
AMCG00001493 NA other downstream 950013 5889836 ~ 5900998 (+)
AMCG00001509 sf3b5 other downstream 1454280 6394103 ~ 6395960 (+)

Expression


Co-expression Network