AMCG00001475


Basic Information

Item Value
gene id AMCG00001475
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 5481284 ~ 5486455 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001475
CTCCAGAAGCACgggaacatttaaaaccagaacaagttttttcttaaaatcaGGGCAAAGGGCTGGAATTCCGGTCTAGATTTATTGCGTGCATTGCAAACCAGGAAAGTCCTGCTTCTCACGCAAGCTTTGGCTGGGTGGGAGGAGCTTCCCTTCCCACACTGCACCTCACTGTTCAGCCAGTACTCCAGCTGCATGTAAAGAGTGGAAAGAAGTGAAGGAAGGCAGATGACACAGAATACAGCAGGCTTACACTACAGCACAAAACATGAGCACCccatttgaaaaagaaatgaaagagagGCTGGAAGAAGCCAAAAACATGACAGAGAAAGACAAGGTTTACATGTACAATGGAGTATTATATCCCATAATAATGTGTAAACCAGAgaatttaaaagcaatggaGACTTTTGAGGCTAGGGAAGATGACATAATGCTAGCAGCCTATCCAAAATGTGGGTTTAACTGGATGGTTGGGATGATGCGTAAAATGTCTGCGGTTGACAGCTGTGTAGATGAAAAGCATGCCCCCATTCCTTCATTGCTGGAATTTGTTAATCCAGAAAAATACCAGtctATAAATGAGGCTCCTTCCCCAAGACTTCTAGGAACACACATGCACCCTGACAACATACCGGCTTCCCTTactaacaagaaaacaaagATTCTCGTGGTGTTGCGCAACCCTAAAGACACTGTGGTCTCTTTCTTCCACTTCACCAACAAAAACCCTGTTCTGCCAACTGCTGAGTCCTGGGACAAGTTCTTTGCAGATTTCATGAGTGGAGAAGTTTCTTGGGGCTCTTACTTTGACCATGCCCTTTCTTGGGAGAAGCGCATGGACAATCCCAATATCATGTTTGTGACTTACGAAGACATGAAAGAGAACCTGAGTGAAGAACTCAAGCAGATTGCCAAATTCTTCAATTTCACCCTGAGTGAAGAGCAGGTCAACACTATTGCTCAAGAGAGCACTTTCACAGCCATGAAAGAAAGTTCCAAGCACACACACGGCCCAATGTGCAATGTGATCTTCAGGAAAGGGGAAGTGGGAGACTGGAAAAATCACTTCAGCGAAGACCAGAGTAAAGAGATGGATAATAGGTTTGAGAAGTGCCTTGGAGGAACCAAGATAGGGGCCAGACTGAAGTATGATATATACTGCCAGTAG

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0042221 response to chemical biological_process
GO:0008146 sulfotransferase activity molecular_function

KEGG:

id description
K22523 SULT6B1; sulfotransferase 6B1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001475 True 1174 mRNA 0.44 7 5481284 5486455

Neighbor

gene id symbol gene type direction distance location
AMCG00001478 NA coding upstream 12346 5465896 ~ 5468938 (+)
AMCG00001479 NA coding upstream 67748 5403225 ~ 5413536 (+)
AMCG00001470 NA coding upstream 230840 5249374 ~ 5250444 (+)
AMCG00001460 NA coding upstream 541461 4914851 ~ 4939823 (+)
AMCG00001459 NA coding upstream 595681 4876148 ~ 4885603 (+)
AMCG00001476 acoxl coding downstream 4871 5491326 ~ 5502268 (+)
AMCG00001477 acoxl coding downstream 50881 5537336 ~ 5557467 (+)
AMCG00001488 vip,LOC107597641,LOC107679148,LOC107655780,LOC107585469 coding downstream 333151 5819606 ~ 5826495 (+)
AMCG00001498 NA coding downstream 503807 5990262 ~ 6001627 (+)
AMCG00001497 LOC107578948,LOC107682299 coding downstream 599145 6085600 ~ 6086340 (+)
G158104 NA non-coding upstream 58192 5421471 ~ 5423092 (+)
G158089 NA non-coding upstream 166048 5313068 ~ 5315236 (+)
G158014 NA non-coding upstream 592932 4888114 ~ 4888352 (+)
G157985 NA non-coding upstream 606140 4872695 ~ 4875144 (+)
G157975 NA non-coding upstream 767124 4713895 ~ 4714160 (+)
G158184 NA non-coding downstream 221637 5708092 ~ 5734559 (+)
G158230 NA non-coding downstream 405591 5892046 ~ 5892246 (+)
G158332 NA non-coding downstream 910465 6396920 ~ 6398188 (+)
G158337 NA non-coding downstream 922566 6409021 ~ 6410557 (+)
G158342 NA non-coding downstream 935545 6422000 ~ 6422235 (+)
AMCG00001480 NA other upstream 98220 5366005 ~ 5383064 (+)
AMCG00001457 NA other upstream 829284 4623467 ~ 4652000 (+)
AMCG00001430 srf other upstream 1418951 4045356 ~ 4062333 (+)
AMCG00001433 NA other upstream 1457374 4022797 ~ 4023910 (+)
G157781 NA other upstream 1600505 3875209 ~ 3880779 (+)
AMCG00001486 NA other downstream 107225 5593680 ~ 5633349 (+)
AMCG00001489 NA other downstream 383520 5869975 ~ 5871430 (+)
AMCG00001493 NA other downstream 403381 5889836 ~ 5900998 (+)
AMCG00001509 sf3b5 other downstream 907648 6394103 ~ 6395960 (+)
G158478 NA other downstream 1388313 6874768 ~ 6876578 (+)

Expression


Co-expression Network