AMCG00001489


Basic Information

Item Value
gene id AMCG00001489
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 5869975 ~ 5871430 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001489
TTGTCACCATTCGTTTGCTGTCTGCTCCCTAGGCTCCACAATGTGAGCAGAGATGCCCTGCAACCAATCTGTGTCGAATACACCTCCACCAAGTCTGCGGAGGATCTCCTGGACTTCTCCCTGAAGTTCATGACTGATGAGTGGAGCTCCCCTAGACCCTCCAACGTGTACTTCCTGGGGGACGTCCTGAACATCCAAGCCTCTGTCAAGCAGGCCAGCCACGTGCCCCTGCGGCTGTTTGTGGACAGCTGTGTGGCCaccttgacctctgaccctaCCTCTTTTCCCAGTTACGTGCATTGGGAACTATGGTGCCCTAACCGTGCCAATGTCTGTTCCGCTCTGATCTACATGACCTGCCACCTGAAGATGACTGCTGCTTCCCAGGCTGTGGACAACCTGAACAAGGCCCTCTGGAGCTCTGTGGATGGGAGCGATCAGGTCTGTAGCTGCTGTGACTCCAGCTGTAGCCCTGTCTCTGAATCCAGGTACTTCGGGAGGTACAGGAGGGACTTGGCTTTCAAGGAGGAATGGGAAGGTGATGCCACAGTGTCTGTGCGTGTGCTGGAGCAGCCGCAGGATGCCATCCCTCCAGTGGAGATGGATGCCCAGAAGTCTCCCCTGATTGCAGAGGACCGCAAAGCAGCAGGCATCTCTGTGGAAGTTGTGCTCCTGGCTGGTGTGGTGGGTGTGGTGTGCATTACTGTGTAGTACAGGAGAGCAAGCACACCCACAAATCCAACCTTTACTGTCTCTGAAGAAAAATA
>TU199229
TGACCTGCCACCTGAAGATGACTGCTGCTTCCCAGGCTGTGGACAACCTGAACAAGGCCCTGTGGGAAACAGCTGGAGCTCTGTGGATGGGAGCGATCAGGTCTGTAGCTGCTGTGACTCCAGCTGTAGCCCTGTCTCTGAATCCAGGTACTTCGGGAGGTACAGGAGGGACTTGGCTTTCAAGGAGGAATGGGAAGGTGATGCCACAGTGTCTGTGCGTGTGCTGGAGCAGCCGCAGGATGCCATCCCTCCAGTGGAGATGGATGCCCAGAAGTCTCCCCT

Function

GO: NA

KEGG:

id description
ko04110 Cell cycle

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001489 True 767 mRNA 0.55 6 5869975 5871430
TU199229 False 282 TUCP 0.58 3 5870719 5871150

Neighbor

gene id symbol gene type direction distance location
AMCG00001488 vip,LOC107597641,LOC107679148,LOC107655780,LOC107585469 coding upstream 43480 5819606 ~ 5826495 (+)
AMCG00001477 acoxl coding upstream 312508 5537336 ~ 5557467 (+)
AMCG00001476 acoxl coding upstream 367707 5491326 ~ 5502268 (+)
AMCG00001475 NA coding upstream 383520 5481284 ~ 5486455 (+)
AMCG00001478 NA coding upstream 401037 5465896 ~ 5468938 (+)
AMCG00001498 NA coding downstream 118832 5990262 ~ 6001627 (+)
AMCG00001497 LOC107578948,LOC107682299 coding downstream 214170 6085600 ~ 6086340 (+)
AMCG00001500 NA coding downstream 313770 6185200 ~ 6191972 (+)
AMCG00001501 NA coding downstream 322832 6194262 ~ 6198251 (+)
AMCG00001510 NA coding downstream 354565 6225995 ~ 6253221 (+)
G158184 NA non-coding upstream 135416 5708092 ~ 5734559 (+)
G158104 NA non-coding upstream 446883 5421471 ~ 5423092 (+)
G158089 NA non-coding upstream 554739 5313068 ~ 5315236 (+)
G158014 NA non-coding upstream 981623 4888114 ~ 4888352 (+)
G157985 NA non-coding upstream 994831 4872695 ~ 4875144 (+)
G158230 NA non-coding downstream 20616 5892046 ~ 5892246 (+)
G158332 NA non-coding downstream 525490 6396920 ~ 6398188 (+)
G158337 NA non-coding downstream 537591 6409021 ~ 6410557 (+)
G158342 NA non-coding downstream 550570 6422000 ~ 6422235 (+)
G158364 NA non-coding downstream 637864 6509294 ~ 6509630 (+)
AMCG00001486 NA other upstream 236626 5593680 ~ 5633349 (+)
AMCG00001480 NA other upstream 486911 5366005 ~ 5383064 (+)
AMCG00001457 NA other upstream 1217975 4623467 ~ 4652000 (+)
AMCG00001430 srf other upstream 1807642 4045356 ~ 4062333 (+)
AMCG00001433 NA other upstream 1846065 4022797 ~ 4023910 (+)
AMCG00001493 NA other downstream 18406 5889836 ~ 5900998 (+)
AMCG00001509 sf3b5 other downstream 522673 6394103 ~ 6395960 (+)
G158478 NA other downstream 1003338 6874768 ~ 6876578 (+)
G158537 NA other downstream 1151958 7023388 ~ 7028141 (+)
AMCG00001550 NA other downstream 1799884 7671314 ~ 7679783 (+)

Expression


Co-expression Network